| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1985 |
|---|
| Symbol | |
|---|
| ID | 4604235 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 2412535 |
|---|
| End bp | 2413059 |
|---|
| Gene Length | 525 bp |
|---|
| Protein Length | 174 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 639781362 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_927860 |
|---|
| Protein GI | 119775120 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1399] Predicted metal-binding, possibly nucleic acid-binding protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00000046877 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.000655562 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGCAAACAG TAAAGATACC GGTTTCTATC GATCCGATCC GCGCCGCGTC AAATCGCCTG
AGTTATCAGG GGATTGTGCC AGGCAAGGTG TTAAAACGAT TGAGAGAATT GACAGCCGGC
GACTGTTCCG ATGTGACAGT GTCGTTGGAA TGTGGTGTTG ATTTACAGGG GATAGTCTAC
CTGAAAGGGA CGGCTGTGAC GGAGCTCACT CTGTTATGTC AACGTTGCAT GGCACTTTAT
ACCACTGAGG TTACGGTCGA CTTTTGCTTC AGTCCTTGCA GGACAGAGGC GGAAATCGAT
GAGCTCCCGG ATGCGTATGA CCCTATTGAG TGCGATGAAA TTGGCGAGAT ACGTCTGCAG
CAACTGGTCG AAGACGAGTT GATTTTGGCA ATGCCTTTGA TCCCGGCGCA TCAAAATATT
GATTGCAACC TGGGTTCCCA GGACATAGTC GTAGGCGAGA TTGAAGCCGC TCAAGAGGAG
CGTCCAAATC CGTTTGCAGT GTTAGAAAAA CTGAAGAGCA AGTAA
|
|---|
| Protein sequence | MQTVKIPVSI DPIRAASNRL SYQGIVPGKV LKRLRELTAG DCSDVTVSLE CGVDLQGIVY
LKGTAVTELT LLCQRCMALY TTEVTVDFCF SPCRTEAEID ELPDAYDPIE CDEIGEIRLQ
QLVEDELILA MPLIPAHQNI DCNLGSQDIV VGEIEAAQEE RPNPFAVLEK LKSK
|
|---|
| |