| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1984 |
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| Symbol | rpmF |
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| ID | 4604234 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 2412348 |
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| End bp | 2412518 |
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| Gene Length | 171 bp |
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| Protein Length | 56 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 639781361 |
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| Product | 50S ribosomal protein L32 |
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| Protein accession | YP_927859 |
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| Protein GI | 119775119 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0333] Ribosomal protein L32 |
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| TIGRFAM ID | [TIGR01031] ribosomal protein L32 |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000000709039 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.000595562 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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| |
Sequence |
| Gene sequence | ATGGCTGTAC AACAGAACAA AAAATCTCGT TCAAAGCGCG GTATGCGCCG TTCACATGAC
GCTCTGAGCA CTGCTCAGCT GTCAGTAGAC GCTACCAGCG GTGAACTGCA TCTGCGTCAC
AATGTGACCG CTGATGGTTA CTACCGTGGT AAGAAGGTTA TCAACAAGTA A
|
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| Protein sequence | MAVQQNKKSR SKRGMRRSHD ALSTAQLSVD ATSGELHLRH NVTADGYYRG KKVINK
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