Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_1983 |
Symbol | |
ID | 4604233 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 2411305 |
End bp | 2412333 |
Gene Length | 1029 bp |
Protein Length | 342 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 639781360 |
Product | putative glycerol-3-phosphate acyltransferase PlsX |
Protein accession | YP_927858 |
Protein GI | 119775118 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG0416] Fatty acid/phospholipid biosynthesis enzyme |
TIGRFAM ID | [TIGR00182] fatty acid/phospholipid synthesis protein PlsX |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000000578397 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.000727817 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
| |
Sequence |
Gene sequence | ATGACGAATC TGACGCTTGC GTTAGATGCG ATGGGGGGCG ATCACGGCCC CCAAGTCACG GTGCCTGCGG CTTTGCAGGC ACTTCGACTA CACCCTAAGC TCTCCCTCCT GCTCGTCGGT GACGAGACTC AAATATCCCC GTATCTTTCT TCTGCTGAGA TAGACGTTCG CAGCAGGATA ACCCTTGTGC ATACCACCGA AGTGGTGCGT ATGGACGATA AGCCCGCAAC TGCGCTCAGA CATGCAAAAA ACAGCTCCAT GCGACTGGCC ATAGAACAGG TTCGTGATGG CATGGCTGAT GGCTGTGTCA GTGCCGGTAA CACTGGCGCG CTGATGGCGA TGGCCAAGGT ACTGCTTAAA ATGTTGCCCG GTGTCGACAG GCCCGCGTTG GTCAGTTGCT TGCCGGCTAT CAATGGTAAA CCCGTTTATT TGCTCGATCT TGGTGCCAAC ATTCAGTGCG ACTACGATAC CTTGTTCCAA TTTGCGGTGA TGGGCTCAGT GCTCAGTGAA GCGGTCGATA AGATTGCCCG CCCCAAGGTC GCGCTTCTGA ATGTGGGCAT TGAAGAATGC AAGGGCAATG GCGATGTGCA GCAGGCTGCA CAATTACTGC TTCATACTCC CCAGCTCAAC TATGCCGGCT TTATTGAAGG CGATGAAATC TACAGTGGAA AAGTGGATGT CATCGTTTGT GACGGCTTTG TGGGCAACAT CACACTCAAA ACCTCAGAAG GCATTGCCAG ACTGCTGGTT CATCAATTAA AACAAGGCCT GGCCAAAGGC TTTGTGGTTC GAATACTTGC GCGTTTGCTC GCGCCCCGCA TTCAGAAAGT ACTCAACCAG ATGAACCCCG ACCACTATAA CGGAGCAAGT CTGTTAGGAT TGCGCGCAGT AGTAGTGAAA AGCCACGGTA ATGCAGACGA ACACGCCTAT ATACAAGCAA TTAGTCTTGC CTACACCGAG GCAAAACGTC GACTTCCAGA GATGATCAAA GATCGTCTTG AGTCGATTCT TTTAGATATC AATAGCTGA
|
Protein sequence | MTNLTLALDA MGGDHGPQVT VPAALQALRL HPKLSLLLVG DETQISPYLS SAEIDVRSRI TLVHTTEVVR MDDKPATALR HAKNSSMRLA IEQVRDGMAD GCVSAGNTGA LMAMAKVLLK MLPGVDRPAL VSCLPAINGK PVYLLDLGAN IQCDYDTLFQ FAVMGSVLSE AVDKIARPKV ALLNVGIEEC KGNGDVQQAA QLLLHTPQLN YAGFIEGDEI YSGKVDVIVC DGFVGNITLK TSEGIARLLV HQLKQGLAKG FVVRILARLL APRIQKVLNQ MNPDHYNGAS LLGLRAVVVK SHGNADEHAY IQAISLAYTE AKRRLPEMIK DRLESILLDI NS
|
| |