| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1971 |
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| Symbol | rrmA |
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| ID | 4604221 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 2399213 |
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| End bp | 2400052 |
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| Gene Length | 840 bp |
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| Protein Length | 279 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 639781348 |
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| Product | 23S rRNA methyltransferase A |
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| Protein accession | YP_927846 |
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| Protein GI | 119775106 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG2226] Methylase involved in ubiquinone/menaquinone biosynthesis |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0469573 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0234483 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTAGCCC AGAACATTCA GCCGATTTAC CTTTGTCCTT TATGTAAAGC GTCCTTGCAG
TCGGAAACAA CCGGCTTGGT ATGCCCCGCA GGTCATAGAT TCGACAAGGC AAAAGAGGGC
TATGTCAATC TGTTACCGGT ACAGAAAAAA AAGTCAAAGG ACCCCGGCGA CAACAAGGAG
ATGATGCAGG CCCGTCGCTT GTTTTTGGAG TCGGGCTCTT ACCAAGCACT GAGTGACAGG
GTGGGGGAAT TGGTACTTGG GTTACCGGTA AGTCCAGCAA CCATACTGGA TCTCGGGTGT
GGGGAGGGCT ACTACACCCA CAGGCTGCAA CAGGTTCTGG CAAAGGAAGA CATTTGGCCC
CAACTTTACG GCCTGGACAT TTCCAGGGCT GCCCTGAAGG CGGCAGCCAA ACGATATCCG
CAAATTCATT TTTGTGTTGC CAGCAGTTTT GACACGCCGT TTGCAAGTGA GTTTTTCGAC
CTAGTAGTAC GCATTTATGC GCCCTCAAAA CCTGAAGAAC TCAAGCGCTT GGTTAAACCG
GGTGGCCATT TGCTGACAGT GTCAGCCGGG CCCATGCATC ACTTCGCCGT CAAGCAGCGC
ATATACGACA CCCCAAGGTT GCATGAAGAT AGCGTAGAGC AAATCGATGG ATTTGAAATC
GTGAGTTCAG AGCGCTTGCA ATGGCAGCTC GAGATGGAAA ACCCCGAGCT CATACTCGCA
TTTCTTGAAA TGACTCCCTA CGCTTGGAAG TTTACCCCAG AGGCACGCAC ACAGCTTGCT
GGCGAGCCAT TCAGTTGCGA ACTGGATTTT CGGATAAATT TACAGCGTCG GGTGCTGTAA
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| Protein sequence | MVAQNIQPIY LCPLCKASLQ SETTGLVCPA GHRFDKAKEG YVNLLPVQKK KSKDPGDNKE
MMQARRLFLE SGSYQALSDR VGELVLGLPV SPATILDLGC GEGYYTHRLQ QVLAKEDIWP
QLYGLDISRA ALKAAAKRYP QIHFCVASSF DTPFASEFFD LVVRIYAPSK PEELKRLVKP
GGHLLTVSAG PMHHFAVKQR IYDTPRLHED SVEQIDGFEI VSSERLQWQL EMENPELILA
FLEMTPYAWK FTPEARTQLA GEPFSCELDF RINLQRRVL
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