Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_1963 |
Symbol | |
ID | 4604213 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 2391322 |
End bp | 2393232 |
Gene Length | 1911 bp |
Protein Length | 636 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 639781340 |
Product | arginine decarboxylase |
Protein accession | YP_927838 |
Protein GI | 119775098 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1166] Arginine decarboxylase (spermidine biosynthesis) |
TIGRFAM ID | [TIGR01273] arginine decarboxylase, biosynthetic |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.143441 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACGAAT GGTCAATTGA CGACGCCCGC GCCGGGTACA ACGTTGCCCA CTGGAGTCAG GGTTTTTATG GGATCAGCGA CGAGGGTGAG GTAACCGTCT CCCCGGATCC TAAAAATCCC ACCTTCAAAA TTGGTTTGAA CGCGCTGGCC AAGGATATGG TTAAAGCCGG TGTGAGTTTG CCAGTGTTGG TGCGTTTCCC GCAAATTCTG CACCACAGAG TTGATCACCT GTGCCAGATG TTCAATCAGG CCATTCAGAA ATACGAGTAT CAATCTGACT ACCTGCTGGT GTACCCCATC AAGGTAAACC AACAGCAGAC CGTGGTTGAG GAAATCCTCG CAAGCCAGGT AAGCAAGACT GTGCCTCAGC TGGGTCTTGA GGCTGGCAGT AAGCCTGAGC TGATGGCTGT GCTTGCCATG GCGCAAAAGG CCAGTTCAGT AATCGTGTGT AACGGTTACA AAGACAAAGA ATACATTCGC CTGGCGCTGA TTGGTGAGAA ACTCGGCCAC AGTGTATACA TAGTGCTCGA GAAGATGTCC GAGCTGCAGA TGGTGCTCGA AGAGTCCAAG AAGCTGGGTG TTACCCCACG CCTGGGTCTG CGCGCCCGTT TGGCTTTTCA GGGCAAGGGT AAGTGGCAGG CCAGCGGCGG TGAAAAGTCC AAGTTTGGTC TGTCTGCTGC GCAAATCTTA AAGGTCGTCG AGCGTCTGAA AGATGAAGAC ATGCTGGAAT CGCTGCAGTT GCTGCACTTC CACCTGGGTT CGCAAATCGC CAACATCCGT GATATTCGCC ACGGTGTAGG TGAGGCCGCA CGTTTCTACT GTGAACTGCG TAAACTGGGC GCCAAGGTTA ACTGCTTTGA CGTGGGCGGC GGCTTGGCCG TGGATTACGA CGGTACCCGC AGTCAGTCAA ACAACTCCAT GAACTACGCG CTGGCAGAAT ACGCCAACAA CATCGTATCT GTGCTCACCG ATGTGTGTAA TCAGAACGAA CAGCCAATGC CGCGCATTAT TTCTGAGTCA GGCCGTTACC TCACTGCCCA CCACGCGGTA CTCATCACCG ACGTGATTGG CACCGAGGCA TACAGCCCGG AAGACATTCC TGCGCCGGAA GAAGAAGCGC CTCAGCTGCT GCACAACATG TGGCGTAGCT GGAATGAAAT CAGCTCACGT CTCGATCAGC GTGCTCTGAT TGAAATCTTC CACGATACTC AGTCTGATCT GGCCGAGGCC CAATCCCTCT TTGCGTTGGG ACAGCTGAGC CTGGAAGACC GCGCCTGGGC CGAGCAGTGT AACCTTGCTG TGTGTCACGA GTTGCAGGGC TTGATGAACG CCCGTAACCG TTATCAGCGC CCGATCATCG ATGAACTGAA CGAGAAACTG GCTGACAGAT TCTTTGTTAA CTTCTCCTTA TTCCAGTCAC TGCCCGATGC CTGGGGTATC GACCAGGTAT TCCCTGTGCT GCCGCTGTCA GGTTTGGACA AGGTGCCTGA GCGCCGTGCT GTGATGCTGG ATATCACCTG TGACTCAGAC GGTATTGTTG ACCAATACGT AGATGGTCAG GGTATTGAAA CCACGCTGCC GGTACCTAAC TGGTCAGCTG AAGATCCGTA TCTGATTGGC TTCTTCCTGG TGGGTGCTTA TCAGGAAATC CTCGGCGACC TGCACAACCT CTTTGGTGAT ACCAACTCAG CAGTGGTGCG TATCGACGAA GAAGGCCAGA CCAATATCGA GTCTGTACTT GCCGGTGATA CGGTAGCCGA CGTACTGCGC TATGTGAACC TCGATGCCGT GTCCTTCATG CGCACCTACG AGGAGCTGGT GAATTCACAC ATCGCAGAAG ACGAGCGCGC GATGATCCTC GAAGAACTCC AGGTGGGCCT CAAGGGCTAC ACCTATCTGG AAGACTTTTA A
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Protein sequence | MNEWSIDDAR AGYNVAHWSQ GFYGISDEGE VTVSPDPKNP TFKIGLNALA KDMVKAGVSL PVLVRFPQIL HHRVDHLCQM FNQAIQKYEY QSDYLLVYPI KVNQQQTVVE EILASQVSKT VPQLGLEAGS KPELMAVLAM AQKASSVIVC NGYKDKEYIR LALIGEKLGH SVYIVLEKMS ELQMVLEESK KLGVTPRLGL RARLAFQGKG KWQASGGEKS KFGLSAAQIL KVVERLKDED MLESLQLLHF HLGSQIANIR DIRHGVGEAA RFYCELRKLG AKVNCFDVGG GLAVDYDGTR SQSNNSMNYA LAEYANNIVS VLTDVCNQNE QPMPRIISES GRYLTAHHAV LITDVIGTEA YSPEDIPAPE EEAPQLLHNM WRSWNEISSR LDQRALIEIF HDTQSDLAEA QSLFALGQLS LEDRAWAEQC NLAVCHELQG LMNARNRYQR PIIDELNEKL ADRFFVNFSL FQSLPDAWGI DQVFPVLPLS GLDKVPERRA VMLDITCDSD GIVDQYVDGQ GIETTLPVPN WSAEDPYLIG FFLVGAYQEI LGDLHNLFGD TNSAVVRIDE EGQTNIESVL AGDTVADVLR YVNLDAVSFM RTYEELVNSH IAEDERAMIL EELQVGLKGY TYLEDF
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