| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1949 |
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| Symbol | |
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| ID | 4604199 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 2376276 |
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| End bp | 2377259 |
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| Gene Length | 984 bp |
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| Protein Length | 327 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 639781326 |
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| Product | diguanylate cyclase, putative |
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| Protein accession | YP_927824 |
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| Protein GI | 119775084 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2203] FOG: GAF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTGCCCG CACCCATTCC CTTCGATGAG GCCGAAAGGC TTGAGGCGCT TCGTAGCCTG
AATGTACTGG ACACAGAGGC TGAAGAGCGT TTCGATCGCC TCACCCGCTT GGCGCGCAGG
CTGTTTGATG TCCCAATCTG CCTGATAAGC CTGGTCGATT CTGACAGGCA ATGGTTTAAA
TCCTGTATCG GTTTGTCCCA GTCTGAAACC CGCCGTGACA TCTCCTTTTG CGGCCATGCC
ATTATGCAAG CCGATATCTT TGTAATTGAA GATGCGCTCG AAGACTTAAG ATTTGCCGAT
AATCCTCTGG TGACTGGGGA GCCCCATATT CGTTTTTATG CAGGCTATCC GCTGACCTTG
AGTAACGGTC ACAGAGTTGG CACTCTGTGC ATTATTGACC GGAAAGCTCG TCGTTTTGAG
CCTGAGGATT ATTGCGATCT GGAAGATCTC GGTAAGTTGG TGGTATCGGA GCTCGAAGCG
GTACAAACCG CGACCCTGGA TCCCTTAACG GGCCTGTCAA ATCTGCGCGG GTTCGATCTT
CTCGCCAAAC AGTGCCTTGC CAAGTGTCAG CGGCAACAGC AGGATGCGAC CCTGTTTTTT
CTGGACCTTG ATTATTTCAA GGAAATCAAT GACCGATTTG GGCATCAGGA AGGCAACAGT
GCCCTCGTGG CATTCGCCAG CCTGCTTAAA GAAGCATTTC GTGAGTACGA TGTGATTGCC
CGTATAGGCG GTGATGAGTT TGTTGCGCTG GTTAGCCATG AACGGTCAAT GTCGCCAGCG
GCGGGGATCT TAAGCCGCTT GCGTCATAAC CTGGCCAGGC ACAATATTGA TACTCCCATT
GGTTATCAGC TGGAATTCAG CTGCGGTACT GCCCGTTTTG ATGCGCTGTT ACCAAGCTCT
CTTGAGCGGT TACTTGAAGA TGCGGACATC CATATGTACC GCGAAAAGCA AATTCATCAC
CAAAAGCATG ACGAGCAGAA CTGA
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| Protein sequence | MLPAPIPFDE AERLEALRSL NVLDTEAEER FDRLTRLARR LFDVPICLIS LVDSDRQWFK
SCIGLSQSET RRDISFCGHA IMQADIFVIE DALEDLRFAD NPLVTGEPHI RFYAGYPLTL
SNGHRVGTLC IIDRKARRFE PEDYCDLEDL GKLVVSELEA VQTATLDPLT GLSNLRGFDL
LAKQCLAKCQ RQQQDATLFF LDLDYFKEIN DRFGHQEGNS ALVAFASLLK EAFREYDVIA
RIGGDEFVAL VSHERSMSPA AGILSRLRHN LARHNIDTPI GYQLEFSCGT ARFDALLPSS
LERLLEDADI HMYREKQIHH QKHDEQN
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