Gene Sama_1942 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_1942 
SymbolhisD 
ID4604192 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp2369838 
End bp2371145 
Gene Length1308 bp 
Protein Length435 aa 
Translation table11 
GC content58% 
IMG OID639781319 
Producthistidinol dehydrogenase 
Protein accessionYP_927817 
Protein GI119775077 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0141] Histidinol dehydrogenase 
TIGRFAM ID[TIGR00069] histidinol dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAACCT TGGTCTGGAA CACCTTAAGC GAGGATGCCA AGCGCCAGGC GCTGTCCCGC 
TCACCTCTGG TGGGGGATGA TAGTCTGGCG ACATCCGTCA GTGACATTCT TTGCAATGTG
AAGCGTCGCG GCGACAGCAC CCTGATTGAA TACGCGGCGC GCTTCGATAA AGCCGAAATC
GATACGCTGG CGCTGAGTGC GGACGAAATC GCAGCAGCCT GCGAGCGTGT AAGCCCTGAG
CTTAAAGACG CCATCAACGC CGCCCGCACC AACATTGCCC GTTTTCATAG CGCCCAGCAG
TTCAGCGAAA TCAGCCTGGA GACCCAACCG GGAGTTCGCT GCGAGCTTAA AAGTGAGGCC
ATTGAAAAGG TGGGGCTTTA TATTCCGGGC GGTAGTGCCC CCCTTATCAG CACAGTGTTG
ATGTTGGCCG TGCCTGCCGC TATCGCTGGT TGTACCAAGC GGGTACTGGT AAGCCCACCG
CCCATTGATG ACGCCATTCT TTATGCTGCC AGCGTGTGCG GCATTACCGA TGTGTTCCAG
ATAGGCGGCG CCCAGGCCAT TGCGGCGCTC GCCTACGGCA CTGAGAGCGT ACCAAAAGTG
GACAAGATTT TTGGGCCCGG CAATCGTTAC GTGACCGAAG CCAAGGCCCA GGTGGCAAGG
GATACCCAGG CTGCCGTCAC CATCGACATG CCAGCCGGTC CTTCCGAAGT GCTGGTGATT
GCCGATGATG CCGCCAACCC CGAGTTTATC GCAGCAGACC TCTTGTCTCA GGCCGAGCAC
GGCAGTGACT CACAGGTGAT TTTTGTCACC GACTCCCGCA CCCAGGCAAA CGCGGTTGAA
GCGGCCCTTG AGCGCCAGCT CACCCTGCTG CCCAGAAGAG AAACTGCAGA AGGGGCGCTG
TCATGCAGCC GTATTATCAT TACTGCCACC CTGGATGAGG CGGCAATCGT GTCTAACCTC
TATGCCCCTG AGCACCTCAT TATTCAAACC AGAGAGCCAA GGGCGCTGCT GCCACGTATT
CGTGCGGCTG GGTCCGTATT TTTAGGCGCC TATACGCCGG AATCGGTTGG CGACTATGCC
TCCGGCACCA ACCACGTGCT GCCCACTTAC GGTTACAGTA AGACCGTCTC CAGTTTGTCG
CTGGCCGATT TTTGCCGCCG CTTTACCGTG CAGGAGTTGA GTGCAGAAGG ACTGAAGGGA
CTCGGTCAAA CCGTGATGAC TCTGGCTGCG GCCGAGTCGC TGGATGCCCA CAAAAATGCA
GTAAAAGTCA GGCTTGATGC CATCGCACGT GAGGAGAATC GTCAATGA
 
Protein sequence
METLVWNTLS EDAKRQALSR SPLVGDDSLA TSVSDILCNV KRRGDSTLIE YAARFDKAEI 
DTLALSADEI AAACERVSPE LKDAINAART NIARFHSAQQ FSEISLETQP GVRCELKSEA
IEKVGLYIPG GSAPLISTVL MLAVPAAIAG CTKRVLVSPP PIDDAILYAA SVCGITDVFQ
IGGAQAIAAL AYGTESVPKV DKIFGPGNRY VTEAKAQVAR DTQAAVTIDM PAGPSEVLVI
ADDAANPEFI AADLLSQAEH GSDSQVIFVT DSRTQANAVE AALERQLTLL PRRETAEGAL
SCSRIIITAT LDEAAIVSNL YAPEHLIIQT REPRALLPRI RAAGSVFLGA YTPESVGDYA
SGTNHVLPTY GYSKTVSSLS LADFCRRFTV QELSAEGLKG LGQTVMTLAA AESLDAHKNA
VKVRLDAIAR EENRQ