| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1933 |
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| Symbol | |
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| ID | 4604183 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 2359614 |
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| End bp | 2360729 |
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| Gene Length | 1116 bp |
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| Protein Length | 371 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639781310 |
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| Product | ribonuclease D |
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| Protein accession | YP_927808 |
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| Protein GI | 119775068 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0349] Ribonuclease D |
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| TIGRFAM ID | [TIGR01388] ribonuclease D |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000115292 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCTGGAGT TTCACTACGT AAAGGACGAT GAAGCGCTGA CCGCTTTGGT CGACCAATAC
AGCCAAAGCC GATTATTGGT ATTGGACACC GAGTTTGTGC GTACCCGTAC CTATTACGCC
AAGTTGGGTC TAATTCAGGT ATACGATGGC AATACTCTGG CCCTGATAGA CCCGCTCGAT
ATTCAGGATT TATCTGGCTT TTGGGCGCTG CTTACCAACC CGAATATCCT TAAGTTGGTT
CATTCCTGCT CTGAAGATCT GGAAGTCTTT GCCCGTTATG GCAAGGTTCA GCCCACCCCC
CTGTTTGATT CGCAGATTGC GGCCGCGCTC AGTGGGATGG GCCATGGACT TGGCTATGCC
AAACTGGTCG AAGAATGTTT GGGGCAGACC CTGGACAAGG GAGAATCCCG TACAGACTGG
ATAAAGCGCC CTCTGACCGA TGCCCAGCTG CAGTACGCCG CCAATGATGT GTTCTATCTG
TACCAGCTTT ATCCTCAGCT TGAACAAAAG CTTAAAACGC TGGGCCGCTT CGATTGGGTA
CTGGAGGAAG GCGCCCGCCT GACAGAAGGG CGTTTGCAGC GCCCTGAGGC TGCAACGGCA
TATCTTAAGG TGAAGAACGC ATTTCAGCTG ACCCCGAAGC AATTGGCCTA CCTGAAAGTG
CTGGCAGCCT GGCGGTTGGA GCGCGCACTT GACCGGGACC TTGCGCTTGG CTTTGTGATT
AAAGACCACG CCCTGATTGC CCTTGCGAAA AAGCCGCCTC GCTCCATCAG TGATTTATTG
AAAATCAACG ATCTCTCTGA GCATGAGAAA CGCATTCACG GCAAGGACAT CCTGAAAGTG
TTGCAAAAGG CCGATGTGGA GAATCCACCG GCCGCCATTG ATGTGATTGC ACTCAAGCCC
GCTTATAAGC AGGCGTTTAA AAACATCAAG GCCGCGCTCA CCGAGATTTG TGAGCGTGAA
GGGTTACCGA GCGAGCTTTT CTGCTCAAAA CGTCATATCC ACGAATATCT CGAGTATCGC
TGGCAAGGTG ATGCAGAGGA TACGCCGCTG TTGCTGCAGG GATGGCGCGG GAAACTCGCA
ACTGACGTAC TGCAAGCTTT GGTACTGGAA CCCTAA
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| Protein sequence | MLEFHYVKDD EALTALVDQY SQSRLLVLDT EFVRTRTYYA KLGLIQVYDG NTLALIDPLD
IQDLSGFWAL LTNPNILKLV HSCSEDLEVF ARYGKVQPTP LFDSQIAAAL SGMGHGLGYA
KLVEECLGQT LDKGESRTDW IKRPLTDAQL QYAANDVFYL YQLYPQLEQK LKTLGRFDWV
LEEGARLTEG RLQRPEAATA YLKVKNAFQL TPKQLAYLKV LAAWRLERAL DRDLALGFVI
KDHALIALAK KPPRSISDLL KINDLSEHEK RIHGKDILKV LQKADVENPP AAIDVIALKP
AYKQAFKNIK AALTEICERE GLPSELFCSK RHIHEYLEYR WQGDAEDTPL LLQGWRGKLA
TDVLQALVLE P
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