| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1923 |
|---|
| Symbol | |
|---|
| ID | 4604173 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 2350836 |
|---|
| End bp | 2352359 |
|---|
| Gene Length | 1524 bp |
|---|
| Protein Length | 507 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 639781300 |
|---|
| Product | SpoVR family protein |
|---|
| Protein accession | YP_927798 |
|---|
| Protein GI | 119775058 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2719] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00000604699 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGAAAAC GCACACCTTT AAGCGACGGA CCGGATTGGA CCTTTGAACT GTTGGAAGAG
TACCAACGGG AAATTGAGCG GGTTGCAGCG CACTATCGGC TCAACACTTA CCCAAATCAA
ATTGAGGTTA TCACTGCCGA GCAGATGATG GATGCCTATG CTGGCATCGG TATGCCCATA
GGCTACACCC ACTGGTCTTT TGGCAAACGT TTTATTCAAA CAGAACAAAG CTACAAGCGA
GGCCAAATGG GGCTCGCCTA TGAAATTGTT ATCAATTCCA ATCCCTGCAT CGCCTATTTG
ATGGAAGAAA ACACCATCAC CATGCAGGCA TTGGTGATGG CCCATGCTTG CTACGGCCAC
AACAGCTTTT TCAAAGGCAA TTACCTGTTC AAAACCTGGA CCGATGCCAG CTCAATTATC
GACTATCTGG TCTTTGCCAA AAATTACATT GCAGAATGCG AACAGCGCCA CGGTGTCGAT
GCCGTGGAAA ATGTAATCGA TTCCTGTCAT GCCCTAATGA ACTATGGTGT TGACCGCTAC
AAACGCCCGT CCGAAATATC ATTCCGCGAA GAAAAAGCCC GCCAGAAAGA GCGTGAGGAA
TACCTGCAAA GTCAGGTGAA TGACCTTTGG CGCACCATTC CGGTCAGCCA GGTCGAAAAA
GTCCAGCCCA AAAAACGTTT TCCTGCTGAG CCTCAGGAGA ACATTCTCTA TTTCATTGAG
AAGCACGCAC CACTGCTTGA ACCATGGCAA AGGGAAATCG TACGCATTGT CCGCAAGATG
GGGCAGTATT TTTATCCCCA GAAGCAAACC CAGGTGATGA ACGAGGGCTG GGCCACCTTC
TGGCACTACA CCATTTTGAA TCACCTCTAT GATGAAGGTC TGGTGACCGA CCGTTTTATG
CTGGAATTCC TGCAAAGCCA CACGGGTGTG GTCGCACAAC CCGCTTACAA CAGTCGCTAT
TATTCCGGCA TTAACCCCTA CGCCCTCGGA TTCAATATGT TCACCGATAT CCGCCGGATC
TGTGAAAACC CCACAGAGGA AGACAGAGCC TGGTTCCCTG AAATTGCCGG CAGCAATTGG
CTCGATACCC TGCACTTTGC CATGGAAAAC TTTAAAGACG AGAGTTTTAT CAGCCAATAT
CTGTCGCCGG CCATGATAAG ACAGTTCAAG CTTTTCGGGA TTGTGGACGA CGAGCGAAAA
AACTATCTGT CTATTTCAGC TATCCATGAT GAGGTCGGCT ATCGGGAAAT TCGGCAAACC
ATGTCACAGC AATACAACCT CTCCAATCTT GAACCCAACA TTCAGGTGCA CAGGGTTGAG
GTAATGGGCG ATCGCTCCAT GACATTAAGG TATGTTCCTT TCAACAATAT TCCACTGGCA
GACGATTACA GGGAAGTGCT GAAACACCTT CATCGATTGT GGGGTTTCAC CGTGGTGCTT
GAACAGGAAG AAAGTGATGG CACCATCAAG GAGCTGGCAC GCTGCCCCCC ACGAGATGAA
GAGGGACACT CGGTGAAAAT ATAA
|
|---|
| Protein sequence | MGKRTPLSDG PDWTFELLEE YQREIERVAA HYRLNTYPNQ IEVITAEQMM DAYAGIGMPI
GYTHWSFGKR FIQTEQSYKR GQMGLAYEIV INSNPCIAYL MEENTITMQA LVMAHACYGH
NSFFKGNYLF KTWTDASSII DYLVFAKNYI AECEQRHGVD AVENVIDSCH ALMNYGVDRY
KRPSEISFRE EKARQKEREE YLQSQVNDLW RTIPVSQVEK VQPKKRFPAE PQENILYFIE
KHAPLLEPWQ REIVRIVRKM GQYFYPQKQT QVMNEGWATF WHYTILNHLY DEGLVTDRFM
LEFLQSHTGV VAQPAYNSRY YSGINPYALG FNMFTDIRRI CENPTEEDRA WFPEIAGSNW
LDTLHFAMEN FKDESFISQY LSPAMIRQFK LFGIVDDERK NYLSISAIHD EVGYREIRQT
MSQQYNLSNL EPNIQVHRVE VMGDRSMTLR YVPFNNIPLA DDYREVLKHL HRLWGFTVVL
EQEESDGTIK ELARCPPRDE EGHSVKI
|
|---|
| |