Gene Sama_1916 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_1916 
Symbol 
ID4604166 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp2342655 
End bp2343380 
Gene Length726 bp 
Protein Length241 aa 
Translation table11 
GC content54% 
IMG OID639781293 
ProductDNA replication initiation factor 
Protein accessionYP_927791 
Protein GI119775051 
COG category[L] Replication, recombination and repair 
COG ID[COG0593] ATPase involved in DNA replication initiation 
TIGRFAM ID[TIGR03420] DnaA regulatory inactivator Hda 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.139395 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGAGAAGTA ACCGAGTGAC ACAACATCCC CCATTGCAGT TGTCCCTGCC TGTACATTTG 
CCAGACGATG AGACCTTTAC CAGTTATTAC CCCGCGGCGG GTAACGACGA GCTTATCGGT
GCGCTGAAAT CGGCGGCAAG TGGCGATGGG GTGCAGGCTA TTTATTTGTG GGGACCGGTC
AAGTCGGGAC GCACCCATCT TATCCATGCG GCCTGCGCCC GTGCCAATGA GCTGGAGCGC
CGCAGTTTCT ATATTCCGCT CGGAATTCAC GCCAGTATTT CCACGGCCTT GTTGGAAGGG
TTGGAGCAGT TTGACCTTAT CTGTATCGAT GATGTAGATG CGGTGGCTGG TCACCCCCTG
TGGGAAGAGG CGATATTTGA TCTCTACAAC CGGGTAGCAG AGCAAAAACG TGGCAGTTTG
ATAGTCAGTG CCAGTGCTTC GCCCATGGAG GCGGGTTTTG TGCTGCCGGA TCTCGTGTCC
AGAATGCATT GGGGGCTGAC TTACCAGCTC CAGCCTATGA TGGACGATGA GAAACTCGCG
GCATTGCAAC GCCGTGCTGC CATGCGCGGA CTCCAGTTAC CTGAAGACGT GGGGCGGTTC
TTACTTAATC GCATGGCGCG AGATTTACGC ACACTGTTTG ATGTCCTCGA CCGGCTTGAT
AAGGCGTCCA TGGTTCATCA GCGCAAGCTG ACCATACCTT TTGTCAAAGA GATGCTGAGG
CTGTAA
 
Protein sequence
MRSNRVTQHP PLQLSLPVHL PDDETFTSYY PAAGNDELIG ALKSAASGDG VQAIYLWGPV 
KSGRTHLIHA ACARANELER RSFYIPLGIH ASISTALLEG LEQFDLICID DVDAVAGHPL
WEEAIFDLYN RVAEQKRGSL IVSASASPME AGFVLPDLVS RMHWGLTYQL QPMMDDEKLA
ALQRRAAMRG LQLPEDVGRF LLNRMARDLR TLFDVLDRLD KASMVHQRKL TIPFVKEMLR
L