| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1907 |
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| Symbol | |
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| ID | 4604157 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 2335388 |
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| End bp | 2336452 |
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| Gene Length | 1065 bp |
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| Protein Length | 354 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 639781284 |
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| Product | lipoprotein-34 NlpB |
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| Protein accession | YP_927782 |
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| Protein GI | 119775042 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3317] Uncharacterized lipoprotein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00617793 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAGCTG GTTGCACCAC GCCAATGGAG CGCCGTCAGG CCAACGGGAA CGATGAGTAC
GTGAACGCAC AAACCACAGC GCCACTGAAA GTACCTGAAG GGCTCAAGTC CCCCAACTAC
AGCCGTGAAT ACGATATTCC GACTCTGGGT GCCAAGGCCA ATCGTGAATT GGTTGGTAAA
AACCTCGATA TACGTCCACC GCTGCAGGTG CTGCCAATGG CGGAAGGCAC GCGGGTGGAA
GAAGGTTCGG ATAACGTAAA GGTCATTGTT GAGTCGTTCG ACAACAGCCT GGATCTGAAA
CAGGAGATTT TTGGTCTGCT CAAAGATCAT CTGCAAAGCC GTAACATTGA GATAGTAAAA
GAAGACTTTG CTTCAGGCAC TCTGGAAACC GGTTGGATTG AAACCCAGGA AGTGTTGGAG
TCCAGTCTCT GGGGCTCAGA CAAGGTCTTT AACCTGAAAC AGCGTTACCA GTATCAGGTG
GAAGTTCGCC CACATGGCCG CACCGGTGCT GTGATCATTA ACTTGGTTGA CCATCAGGAA
AGCTATGATG GCGATGATTT GAAGACTGCG CTTTCCGCTG ACGATAAGCG TCGTTACGCC
ATTGATATGC TCAACAACTC TATTGCCTAT ATGGCAGTGA AGCGTGAACA GGCCATCAAG
GCCAAGCGCG TCCGCGAAAG TCTGGGCATT GGTGTAGAGC TGGTGGATGG CGCTGAAGAG
GGCGATGCCT TTTATTTGGC CCAAGGCGAT TTCAATCAGG TATGGGGTCG TTTGCGCCTG
GTACTGCCCG AAATGGGCTT CGAAATTGCT GATATGGACA GCAGCAAAGG GGTTTACTTC
CTGAACTACA GCGACAATTC CGGATTCTGG AGTTCGCTGT GGGGCGATGC CAAGCTTGAG
CTGAGTAAGG GCACCTATAA GCTTAACGTC AAAGATGGTG AAACCAAGGG CACCAGCGAG
TTGCATATCC TCGATAAGGA AGACAGCCCA CTGGCCGACG AGAAGGTCGC TCAGATTTAC
CGTGCGCTTG CCGAGTTAAT GAAAGAAGAG CGAAAAGTCC GCTGA
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| Protein sequence | MAAGCTTPME RRQANGNDEY VNAQTTAPLK VPEGLKSPNY SREYDIPTLG AKANRELVGK
NLDIRPPLQV LPMAEGTRVE EGSDNVKVIV ESFDNSLDLK QEIFGLLKDH LQSRNIEIVK
EDFASGTLET GWIETQEVLE SSLWGSDKVF NLKQRYQYQV EVRPHGRTGA VIINLVDHQE
SYDGDDLKTA LSADDKRRYA IDMLNNSIAY MAVKREQAIK AKRVRESLGI GVELVDGAEE
GDAFYLAQGD FNQVWGRLRL VLPEMGFEIA DMDSSKGVYF LNYSDNSGFW SSLWGDAKLE
LSKGTYKLNV KDGETKGTSE LHILDKEDSP LADEKVAQIY RALAELMKEE RKVR
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