Gene Sama_1884 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_1884 
Symbol 
ID4604134 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp2299143 
End bp2299919 
Gene Length777 bp 
Protein Length258 aa 
Translation table11 
GC content51% 
IMG OID639781261 
Producthydroxyacylglutathione hydrolase 
Protein accessionYP_927759 
Protein GI119775019 
COG category[R] General function prediction only 
COG ID[COG0491] Zn-dependent hydrolases, including glyoxylases 
TIGRFAM ID[TIGR03413] hydroxyacylglutathione hydrolase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value3.96006e-05 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTGGATA TTCGCCCCAT TCCCGCGTTC GCGGACAACT ACATTTGGAT GATTGTACTG 
CCTGATGGTG GTGCTGTTGT GGTCGACCCA GGCGATGCAA TGCCTGTGAT AAACACCCTC
CAACGCTTGA ACCTGCAATT AACTGCGGTG CTTTTGACCC ATCACCATAG AGATCATAAT
GGTGGCATAA ACCAACTACG TGACTGGGCA AAGTCAAATG GGCAATCGTT CACTGTCTAT
GGCGCTGTAA CCTCCGATTA CAGTGACGTT CTTTGCCGTG ACGGCGATAC TGTCGACATT
TCGGGCTTGA CCAGCCCTGT CAGAGTACTG TCGGTGCCGG GCCACACACT GGACCACCTG
GCCTTCGTGG TAGACAACGC CCTTTTTTGT GGAGACACCC TGTTCAGTGG CGGATGTGGC
CGGTTATTTG AAGGTGATGC GGGTCAACTT TACGATTCAC TGGCAAAGTT AGCATCTCTT
CCCGATGACA CCCTCGTTTA TTGTGCCCAC GAATATACCC TCTCCAATCT GAGGTTTGCG
CTGGCAGTGG AGCCACAAAA TCAATGTCTT CAGGATTACG TTAAGCAGGT GAACAACCTA
CGTGAAGCCA ACAAGCCTTC ACTGCCAAGC ACCCTTGGAA CCGAGAAGGC AATCAACCCT
TTTTTGAGGG TAGATACAGC AACTGTTCAC GCCGCTGTCG CGGCACAAGC TGGACAAAAA
GTGCCAGATG AAGTGACCTG CCTCGCCCTT TTGCGCCGTT GGAAAGACAA TTTTTAA
 
Protein sequence
MLDIRPIPAF ADNYIWMIVL PDGGAVVVDP GDAMPVINTL QRLNLQLTAV LLTHHHRDHN 
GGINQLRDWA KSNGQSFTVY GAVTSDYSDV LCRDGDTVDI SGLTSPVRVL SVPGHTLDHL
AFVVDNALFC GDTLFSGGCG RLFEGDAGQL YDSLAKLASL PDDTLVYCAH EYTLSNLRFA
LAVEPQNQCL QDYVKQVNNL REANKPSLPS TLGTEKAINP FLRVDTATVH AAVAAQAGQK
VPDEVTCLAL LRRWKDNF