Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_1879 |
Symbol | |
ID | 4605979 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 2294720 |
End bp | 2296039 |
Gene Length | 1320 bp |
Protein Length | 439 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 639781256 |
Product | hypothetical protein |
Protein accession | YP_927754 |
Protein GI | 119775014 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR03503] conserved hypothetical protein TIGR03503 |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.00596429 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCCTCTGG CGGGGATAAT CACCTTGTTG AAAGCCTTGC AACTGTTATT GTTGTTTGCG CTGGTCTGTT TGCAGGCCAT GCCCGTGCTT GCTGGCGTCG TGCCCAAAGA GCAGGCGCGG GAGCTTAAAA ATCGTTTTCG CATCGACCAT ATGGTGGAGA GCCTGACGCT GGTTATTCAG CGTGACTACG GCAGTGCACC CGTGGTGGTC GTGTTGCCGG ATGGCAGCAA ATGGTATGCC TCCAGACACC CAGAAACGGT TAAATGGACC GATGGGGTGA CGGGTGACAT CATTTCCATC GAAAATCCCC AGCCCGGTCC CTGGCAGTTG GTAGGCAAGG TGTCCAAGGG CTCAACGCTG CACATGTTAA GTAAGCTCTC GGTGGAAATA GACCCTTTGC CCCAGCCCTT GTTTCAGGGA GAGCGCATCA AAATTACCGC CAGACTCATG GGAGATGAAC AGCGGCTCAG AATGCCGGGT TTGGACTATC TGGTAGAGTG GGTGGCCCGC TTTGTGAGCG ATCATCAGCC AGGGGATGAA AACTTTGCGG CCGGTACAGT GACCGTGGGC AGCTATAAAG ATGACGGTGA AGGCCTGGAT GAACGACCCG ATGACGGCAT CTTTACCGGC ACCATTAACC TGAATCAACC CTGGGGCCAT TACAAATTTA CCGTTCAGGC CCGCAACAAT GTATTCGACC GTGAAGAAGA GATGGCGGTT ATTCTCTCCA GGCATCCCAT CAATCTTCAG CTTATTGAGC CGGACGACCC GCTCACATCA CCTTATCGTA TGAGCGTCAG CATCGATGCT GAAGCATTGC AACTGGCAGA AACTCACCTG GAACTGGAAT TGGTTGGCCC GGCAGGACTC CAGTTACCAA TCACCTTTTC CGGACTGACA GAAGGGCAGA ATGAATTTGT GCTTCCTGAA GTCCATGAGT TCGGTAGTTA CCGCATCAAA GGGGAAGCGT TCTCGACCAC TGTGACCGGC CGCGAAATTG TCCTGAGTTT GCCGGAAAAA TTTTTCAACC TTATCGAACC ACCTGCGCCA CCGCCCAGTC CGGAGGAGAT AGCAGAGCGC GAAGCAGCAA TTGCAGCAGC TGAAGAGGCC AAAGCCAAAG AAAGTGCCAT GATGGTCCTC ATTGGTGTTA ATCTGGTGTT GCTGCTGCTT GGCATAGTTG CCATTATCTT CTGGCGTAAG CGTCAGGCCT TGAAAAAGGC CCTTGAAGCC GCGGCTCTGG ATGCCGCCAA TCAGGACAAA TCATCGAAAT CCATGAAAGA AACTCTGGAT GATATCGACC TGACGTTGCC TGATGATTAG
|
Protein sequence | MPLAGIITLL KALQLLLLFA LVCLQAMPVL AGVVPKEQAR ELKNRFRIDH MVESLTLVIQ RDYGSAPVVV VLPDGSKWYA SRHPETVKWT DGVTGDIISI ENPQPGPWQL VGKVSKGSTL HMLSKLSVEI DPLPQPLFQG ERIKITARLM GDEQRLRMPG LDYLVEWVAR FVSDHQPGDE NFAAGTVTVG SYKDDGEGLD ERPDDGIFTG TINLNQPWGH YKFTVQARNN VFDREEEMAV ILSRHPINLQ LIEPDDPLTS PYRMSVSIDA EALQLAETHL ELELVGPAGL QLPITFSGLT EGQNEFVLPE VHEFGSYRIK GEAFSTTVTG REIVLSLPEK FFNLIEPPAP PPSPEEIAER EAAIAAAEEA KAKESAMMVL IGVNLVLLLL GIVAIIFWRK RQALKKALEA AALDAANQDK SSKSMKETLD DIDLTLPDD
|
| |