Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_1870 |
Symbol | fadE |
ID | 4604120 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 2278706 |
End bp | 2281153 |
Gene Length | 2448 bp |
Protein Length | 815 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 639781246 |
Product | acyl-CoA dehydrogenase |
Protein accession | YP_927745 |
Protein GI | 119775005 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1960] Acyl-CoA dehydrogenases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.114891 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGACTACCC TACTTTGGAG TATCGCGCTG CTTGTGGTGC TTGGTGCCTG CGCTTATTTG CGGGTGTCAT TGCTGACCGC CACGGCCGCA GCCGCCATTA TGTTGACCGC AGGATGGACC TTGGATGTTG TTGGCCTTTG GGGCGGCATC ATCTTTTTGA TTATCGCCCT TCCTCTGAAT ATCAGCAGTA TTCGTCAGAG CCTGATCACC CGCCCGCTGC TGAAAGTTTA CCGAGGCATC ATGCCCGAGA TGTCTTCCAC TGAAAAAGAA GCCATCGACG CCGGTACCAC CTGGTGGGAA GCCGATCTGT TCGCCGGTAA TCCTAACTGG AAGAAGCTGC ACAATTACCC GACCGCCCGC CTTTCTGCCG AAGAACAGGC CTTTATCGAC GGCCCGGTTA ACGAAGTGTG CCGCATGGTG AACGAGCATC AGGTATCCCA TCAGTTCGCT GACCTGCCTG CTGACGTGTG GCAGTACCTG AAAGACAACG GCTTCTTCGC GATGATCATC AAGAAGAAGT ACGGTGGTCT TGAGTTCTCC GCCTACGCCC AATCCCGCGT ACTGCAAAAG CTGGCTGGTG TTTCCAGCGA GCTGGCATCC ACCGTGGGCG TACCAAACTC CCTCGGCCCT GGTGAACTGT TGCAGCACTA CGGTACGGCC GAGCAGCAGG ACCACTACCT GCCACGTCTG GCCAAGGGTC TTGAAGTACC TTGTTTTGCC CTGACCAGCC CGGAAGCCGG TTCTGATGCA GGCTCAATTC CTGACTACGG TGTTGTCTGC AAAGGCATGT GGAAAGGTGA AGAAGTGCTG GGTATGAAGC TCACCTGGAA CAAGCGCTAC ATCACCCTGG CTCCTATCGC GACTGTGCTT GGTCTGGCGT TCAAACTGCG TGACCCTGAG CGTCTGCTTG GCGGCGAAGA AGAGCTCGGC ATCACCTGTG CCCTTATTCC TACCGATGTG GAAGGCGTGG AAACCGGTCG TCGTCACTTC CCACTCAACT GTATGTTCCA AAACGGCCCA ACCCGCGGTA AAGACGTGTT TGTGCCCTTA AGCTTTATCA TTGGCGGCCC GAAAATGGCC GGTCAGGGCT GGCGTATGCT GGTGGAATGT TTGTCGGTTG GCCGCGGCAT TACCCTGCCA TCCAACTCTG CCGGTGGCGT GAAAACTGCT GCACTGGCAA CCGGCGCCTA TGCCCGCATC CGCCGACAGT TCAAGCTGCC TATCGGTAAG CTGGAAGGTA TTGAAGAGCC AATGGCGCGC ATCGGCGGTA ACGCCTATCT GATGGACGCT GTGACCTCGC TGACCACCAC AGGTATCGAT CTGGGTGAAA AGCCATCGGT TATCTCGGCC ATCGTGAAGT ATCACCTCAC CGATCGTATG CAGAAATGCG TAATCGACGC CATGGACATC CACGGCGGTA AAGGCGTGTG CCTTGGCCCC AACAACTACC TGGGCCGTGG TTATCAGGCT GCGCCTATTG CCATTACCGT GGAAGGCGCC AACATCCTCA CCCGCTCTAT GATCATCTAT GGTCAGGGCG CCATTCGCTG CCATCCATAC GTACTGGCCG AAATGGACTC TGCCTTCGAT AAAGACGTGC GTCAGGGCCT GAATAAGTTC GATGCGGCTC TCTTTGGCCA TATCGGCTTT ACTATCAGCA ATCTGATTCG CAGTGTGTGG ATGGGCCTGA CTGGCAGCCG CTTCTCTAAC GCGCCATACG GCGACAAGAC CAAGCGCTAC TACCAGCACA TGAACCGTTT CAGTGCCAAC CTGGCGTTGC TGTCTGATCT GGCCATGGCC ACCCTGGGCG GAAACCTGAA GCGTAAAGAG CGTATCTCTG CCCGTCTTGG CGATATGCTC AGTCAGCTGT ATCTGGCCTC CGCCACCTTG AAACGTTATC AGGATGAAGG CCGTCAAACT GAAGATCTGC CGCTGGTACA GTGGGCGGTT GAAGATGCCC TGTTCAAACT GCAAGCCTCT TTGGATGAGC TGCTGGACAA CTTCCCTGCC GGTCTGGGCG GCGTGCTGCG CGTATTGCTG CTGCCTTTCG GTCGTCCACT GAAGCGTCCA AGCGATGTAC TGGACCACAA GGTTGCCAAA ATCATGCAAA CCCCTTGTGC CAGCCGTGAG CGTCTGGGTC AGGGCCAGTT CTGGGAAGCC TGCGACAACA ACCCTGTGGG TGTTCAGGAA CAGACTTTCA AGGACATCCT TGCCGCTGAG CCCCTGTACG ACAAGGTATG CAAAGCTGCC GGTAAGCGTC TGCCCTTCAT GTGGCTGGAT CAGGTGGCTG CCGAAGGTAA GGCACTGGGC ATTCTGTCTG ATGCCGAGAT CGCCCTGCTG GAGAAAGCCG AGATTGGCCG TATGAAGTCT ATCAACGTAG ACGACTTCGA CCCAGCCGAG CTGGTGGCGC AAACCACCAC TGGCAAGTCT CAGGAGCAAG CGGCGTAA
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Protein sequence | MTTLLWSIAL LVVLGACAYL RVSLLTATAA AAIMLTAGWT LDVVGLWGGI IFLIIALPLN ISSIRQSLIT RPLLKVYRGI MPEMSSTEKE AIDAGTTWWE ADLFAGNPNW KKLHNYPTAR LSAEEQAFID GPVNEVCRMV NEHQVSHQFA DLPADVWQYL KDNGFFAMII KKKYGGLEFS AYAQSRVLQK LAGVSSELAS TVGVPNSLGP GELLQHYGTA EQQDHYLPRL AKGLEVPCFA LTSPEAGSDA GSIPDYGVVC KGMWKGEEVL GMKLTWNKRY ITLAPIATVL GLAFKLRDPE RLLGGEEELG ITCALIPTDV EGVETGRRHF PLNCMFQNGP TRGKDVFVPL SFIIGGPKMA GQGWRMLVEC LSVGRGITLP SNSAGGVKTA ALATGAYARI RRQFKLPIGK LEGIEEPMAR IGGNAYLMDA VTSLTTTGID LGEKPSVISA IVKYHLTDRM QKCVIDAMDI HGGKGVCLGP NNYLGRGYQA APIAITVEGA NILTRSMIIY GQGAIRCHPY VLAEMDSAFD KDVRQGLNKF DAALFGHIGF TISNLIRSVW MGLTGSRFSN APYGDKTKRY YQHMNRFSAN LALLSDLAMA TLGGNLKRKE RISARLGDML SQLYLASATL KRYQDEGRQT EDLPLVQWAV EDALFKLQAS LDELLDNFPA GLGGVLRVLL LPFGRPLKRP SDVLDHKVAK IMQTPCASRE RLGQGQFWEA CDNNPVGVQE QTFKDILAAE PLYDKVCKAA GKRLPFMWLD QVAAEGKALG ILSDAEIALL EKAEIGRMKS INVDDFDPAE LVAQTTTGKS QEQAA
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