Gene Sama_1870 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_1870 
SymbolfadE 
ID4604120 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp2278706 
End bp2281153 
Gene Length2448 bp 
Protein Length815 aa 
Translation table11 
GC content57% 
IMG OID639781246 
Productacyl-CoA dehydrogenase 
Protein accessionYP_927745 
Protein GI119775005 
COG category[I] Lipid transport and metabolism 
COG ID[COG1960] Acyl-CoA dehydrogenases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.114891 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACTACCC TACTTTGGAG TATCGCGCTG CTTGTGGTGC TTGGTGCCTG CGCTTATTTG 
CGGGTGTCAT TGCTGACCGC CACGGCCGCA GCCGCCATTA TGTTGACCGC AGGATGGACC
TTGGATGTTG TTGGCCTTTG GGGCGGCATC ATCTTTTTGA TTATCGCCCT TCCTCTGAAT
ATCAGCAGTA TTCGTCAGAG CCTGATCACC CGCCCGCTGC TGAAAGTTTA CCGAGGCATC
ATGCCCGAGA TGTCTTCCAC TGAAAAAGAA GCCATCGACG CCGGTACCAC CTGGTGGGAA
GCCGATCTGT TCGCCGGTAA TCCTAACTGG AAGAAGCTGC ACAATTACCC GACCGCCCGC
CTTTCTGCCG AAGAACAGGC CTTTATCGAC GGCCCGGTTA ACGAAGTGTG CCGCATGGTG
AACGAGCATC AGGTATCCCA TCAGTTCGCT GACCTGCCTG CTGACGTGTG GCAGTACCTG
AAAGACAACG GCTTCTTCGC GATGATCATC AAGAAGAAGT ACGGTGGTCT TGAGTTCTCC
GCCTACGCCC AATCCCGCGT ACTGCAAAAG CTGGCTGGTG TTTCCAGCGA GCTGGCATCC
ACCGTGGGCG TACCAAACTC CCTCGGCCCT GGTGAACTGT TGCAGCACTA CGGTACGGCC
GAGCAGCAGG ACCACTACCT GCCACGTCTG GCCAAGGGTC TTGAAGTACC TTGTTTTGCC
CTGACCAGCC CGGAAGCCGG TTCTGATGCA GGCTCAATTC CTGACTACGG TGTTGTCTGC
AAAGGCATGT GGAAAGGTGA AGAAGTGCTG GGTATGAAGC TCACCTGGAA CAAGCGCTAC
ATCACCCTGG CTCCTATCGC GACTGTGCTT GGTCTGGCGT TCAAACTGCG TGACCCTGAG
CGTCTGCTTG GCGGCGAAGA AGAGCTCGGC ATCACCTGTG CCCTTATTCC TACCGATGTG
GAAGGCGTGG AAACCGGTCG TCGTCACTTC CCACTCAACT GTATGTTCCA AAACGGCCCA
ACCCGCGGTA AAGACGTGTT TGTGCCCTTA AGCTTTATCA TTGGCGGCCC GAAAATGGCC
GGTCAGGGCT GGCGTATGCT GGTGGAATGT TTGTCGGTTG GCCGCGGCAT TACCCTGCCA
TCCAACTCTG CCGGTGGCGT GAAAACTGCT GCACTGGCAA CCGGCGCCTA TGCCCGCATC
CGCCGACAGT TCAAGCTGCC TATCGGTAAG CTGGAAGGTA TTGAAGAGCC AATGGCGCGC
ATCGGCGGTA ACGCCTATCT GATGGACGCT GTGACCTCGC TGACCACCAC AGGTATCGAT
CTGGGTGAAA AGCCATCGGT TATCTCGGCC ATCGTGAAGT ATCACCTCAC CGATCGTATG
CAGAAATGCG TAATCGACGC CATGGACATC CACGGCGGTA AAGGCGTGTG CCTTGGCCCC
AACAACTACC TGGGCCGTGG TTATCAGGCT GCGCCTATTG CCATTACCGT GGAAGGCGCC
AACATCCTCA CCCGCTCTAT GATCATCTAT GGTCAGGGCG CCATTCGCTG CCATCCATAC
GTACTGGCCG AAATGGACTC TGCCTTCGAT AAAGACGTGC GTCAGGGCCT GAATAAGTTC
GATGCGGCTC TCTTTGGCCA TATCGGCTTT ACTATCAGCA ATCTGATTCG CAGTGTGTGG
ATGGGCCTGA CTGGCAGCCG CTTCTCTAAC GCGCCATACG GCGACAAGAC CAAGCGCTAC
TACCAGCACA TGAACCGTTT CAGTGCCAAC CTGGCGTTGC TGTCTGATCT GGCCATGGCC
ACCCTGGGCG GAAACCTGAA GCGTAAAGAG CGTATCTCTG CCCGTCTTGG CGATATGCTC
AGTCAGCTGT ATCTGGCCTC CGCCACCTTG AAACGTTATC AGGATGAAGG CCGTCAAACT
GAAGATCTGC CGCTGGTACA GTGGGCGGTT GAAGATGCCC TGTTCAAACT GCAAGCCTCT
TTGGATGAGC TGCTGGACAA CTTCCCTGCC GGTCTGGGCG GCGTGCTGCG CGTATTGCTG
CTGCCTTTCG GTCGTCCACT GAAGCGTCCA AGCGATGTAC TGGACCACAA GGTTGCCAAA
ATCATGCAAA CCCCTTGTGC CAGCCGTGAG CGTCTGGGTC AGGGCCAGTT CTGGGAAGCC
TGCGACAACA ACCCTGTGGG TGTTCAGGAA CAGACTTTCA AGGACATCCT TGCCGCTGAG
CCCCTGTACG ACAAGGTATG CAAAGCTGCC GGTAAGCGTC TGCCCTTCAT GTGGCTGGAT
CAGGTGGCTG CCGAAGGTAA GGCACTGGGC ATTCTGTCTG ATGCCGAGAT CGCCCTGCTG
GAGAAAGCCG AGATTGGCCG TATGAAGTCT ATCAACGTAG ACGACTTCGA CCCAGCCGAG
CTGGTGGCGC AAACCACCAC TGGCAAGTCT CAGGAGCAAG CGGCGTAA
 
Protein sequence
MTTLLWSIAL LVVLGACAYL RVSLLTATAA AAIMLTAGWT LDVVGLWGGI IFLIIALPLN 
ISSIRQSLIT RPLLKVYRGI MPEMSSTEKE AIDAGTTWWE ADLFAGNPNW KKLHNYPTAR
LSAEEQAFID GPVNEVCRMV NEHQVSHQFA DLPADVWQYL KDNGFFAMII KKKYGGLEFS
AYAQSRVLQK LAGVSSELAS TVGVPNSLGP GELLQHYGTA EQQDHYLPRL AKGLEVPCFA
LTSPEAGSDA GSIPDYGVVC KGMWKGEEVL GMKLTWNKRY ITLAPIATVL GLAFKLRDPE
RLLGGEEELG ITCALIPTDV EGVETGRRHF PLNCMFQNGP TRGKDVFVPL SFIIGGPKMA
GQGWRMLVEC LSVGRGITLP SNSAGGVKTA ALATGAYARI RRQFKLPIGK LEGIEEPMAR
IGGNAYLMDA VTSLTTTGID LGEKPSVISA IVKYHLTDRM QKCVIDAMDI HGGKGVCLGP
NNYLGRGYQA APIAITVEGA NILTRSMIIY GQGAIRCHPY VLAEMDSAFD KDVRQGLNKF
DAALFGHIGF TISNLIRSVW MGLTGSRFSN APYGDKTKRY YQHMNRFSAN LALLSDLAMA
TLGGNLKRKE RISARLGDML SQLYLASATL KRYQDEGRQT EDLPLVQWAV EDALFKLQAS
LDELLDNFPA GLGGVLRVLL LPFGRPLKRP SDVLDHKVAK IMQTPCASRE RLGQGQFWEA
CDNNPVGVQE QTFKDILAAE PLYDKVCKAA GKRLPFMWLD QVAAEGKALG ILSDAEIALL
EKAEIGRMKS INVDDFDPAE LVAQTTTGKS QEQAA