| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1839 |
|---|
| Symbol | ruvB |
|---|
| ID | 4604089 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 2240347 |
|---|
| End bp | 2241351 |
|---|
| Gene Length | 1005 bp |
|---|
| Protein Length | 334 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 639781215 |
|---|
| Product | Holliday junction DNA helicase RuvB |
|---|
| Protein accession | YP_927714 |
|---|
| Protein GI | 119774974 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG2255] Holliday junction resolvasome, helicase subunit |
|---|
| TIGRFAM ID | [TIGR00635] Holliday junction DNA helicase, RuvB subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.174268 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.184781 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTGAAG CCGACCGGCT TATTCAGCCC CAGGATCTGG GTCAGGAAGA TGTGATTGAC
CGCGCCATGC GGCCAAAATT ACTCGACGAA TACACGGGGC AGGACGATAC CCGCGCCCAG
CTTAAAGTCT TTATTGAGGC GGCTAAAAAG CGCGGCGAAG CCCTGGATCA TATGCTTATC
TACGGCCCAC CAGGCCTGGG TAAAACCACC CTGGCCAATA TCGTTGCCAA CGAAATGGGG
GTGAACATCA AGTCCACCTC CGGGCCTGTG CTGGAAAAGG CAGGCGATTT GGCGGCCCTG
CTCACCAATC TTGAAGAAGG TGACGTGCTC TTTATCGATG AAATCCACCG CTTAAGCCCT
GTGGTGGAGG AAATCCTCTA TCCGGCGATG GAAGACTATC AGCTGGATAT CATGATAGGT
GAGGGGCCCG CTGCACGCTC TATCAAGCTG GATTTGCCGC CTTTTACCCT GGTGGGCGCA
ACAACCCGAG CAGGTTCACT CACATCACCG CTGCGGGCCC GTTTCGGCAT TCCGCTGCGG
CTTGAGTTTT ACAATGTCCG TGACCTGTCA TCCATTGTGG CGCGCTCCGC CAAGGTGATG
GATGTGCCCA TGGATGAAGG TGGCGCCGAA GAGATTGCCC GCCGCAGCCG CGGTACTCCC
CGTATCGCCA ACCGGCTGCT TCGCCGGGTG CGGGACTTTG CTGAAGTGAA GCATGATGGC
GCAATCAGCC GTGCGGTGGC TCAGTCAGCA CTGGATTTAT TGGATGTGGA CAGCGAAGGC
TTTGATTACA TGGACCGCAA GCTGCTGCTG GCGATTATCG ACAAGTTTAT GGGAGGACCT
GTGGGTCTGG ATAACCTTGC CGCCGCCATC GGTGAGGAAC GTGAAACCAT AGAAGATGTG
CTTGAGCCAT TTCTTATTCA GCAGGGGTTT GTGCAGCGCA CACCAAGGGG GCGGATTGCC
ACGGCCCGTG CCTACAGCCA TTTTGACCTT ATCAAACCAG ATTGA
|
|---|
| Protein sequence | MIEADRLIQP QDLGQEDVID RAMRPKLLDE YTGQDDTRAQ LKVFIEAAKK RGEALDHMLI
YGPPGLGKTT LANIVANEMG VNIKSTSGPV LEKAGDLAAL LTNLEEGDVL FIDEIHRLSP
VVEEILYPAM EDYQLDIMIG EGPAARSIKL DLPPFTLVGA TTRAGSLTSP LRARFGIPLR
LEFYNVRDLS SIVARSAKVM DVPMDEGGAE EIARRSRGTP RIANRLLRRV RDFAEVKHDG
AISRAVAQSA LDLLDVDSEG FDYMDRKLLL AIIDKFMGGP VGLDNLAAAI GEERETIEDV
LEPFLIQQGF VQRTPRGRIA TARAYSHFDL IKPD
|
|---|
| |