| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1833 |
|---|
| Symbol | rnfD |
|---|
| ID | 4604083 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 2233471 |
|---|
| End bp | 2234517 |
|---|
| Gene Length | 1047 bp |
|---|
| Protein Length | 348 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 639781209 |
|---|
| Product | electron transport complex protein RnfD |
|---|
| Protein accession | YP_927708 |
|---|
| Protein GI | 119774968 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG4658] Predicted NADH:ubiquinone oxidoreductase, subunit RnfD |
|---|
| TIGRFAM ID | [TIGR01946] electron transport complex, RnfABCDGE type, D subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.457327 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.122422 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGTTCA AGATTGCATC CTCACCCCAT GTCCGCAAAG ACAGCCAAAC CTCGGCTGTG
ATGCAGCGCG TCATTCTTGC CGCCTTACCT GGCCTTGCCG TGCAATGCTA TTTCTTTGGT
TGGGGCACCT TTATTCAGGT GTGTGTTGCC ATCGCGACGG CACTTGCCGC CGAGGCACTG
GTATTGAAGC TTAGAAACCG CCCGATATCA CCTACCTTGA TGGATCAGAG TGCTGTGCTG
ACCGCTCTCC TGATTGGTGT CGCCATTCCA CCGCTGGCAC CCTGGTATTT GGTAGTCATA
GGCACGGTAT TCGCCATCGT GATGGTCAAA CAGCTTTATG GCGGTTTGGG GCAAAACCTC
TTTAACCCTG CTATGGCCGC CTATGTATTG CTTCTGGTGT CTTTCCCGGT TCTGATGACG
ACCTGGGCTG CCCCCAGTAC CCTGGCACAA AGCAGTGCTG GTATCCTGGA TGCCATTGAC
GTGATTTTTT CAGCCCAGGG CGCAGCAGAT TTTGCGCTGG GAATTGATGG CGTCTCCATG
GCGACACCAC TGGACACCTT GAAAACCGAT CTTTCCATGG GGCTTACCGC AGATGAAAGT
CTGAAACGCG CCATCTTCGG TGGCGGCAGC ACCGGTGAAG GCTGGTTCTG GGTGAACCTC
GCTTATCTGT GTGGCGGTTT GTTTTTGCTC GCCACCAAGA CCATCCGCTG GCACATCAGC
GGTGGGCTCA TCGGCGCCCT TTTTGTGTGC AGTCTCTTTG GCTTTGGCGC CTCGCCAGAC
ACCCACGCCA GCCCCCTGTT TAACCTCTTC AGCGGCGCTA CCATGCTGGC TGCCTTTTTT
ATCGCCACCG ACCCGGTTAC CGCAGCCACC AGTCCTCGCG GGCGGCTGCT CTTTGGGGCC
ATGATAGGGG TGCTGATTTA TCTTATTCGC ACCTTTGGTG GTTACCCCGA TGGTGTGGCG
TTCGCGGTAT TGCTGGCTAA CCTCTGCGCT CCACTAATCG ACTATTACAT CAAGCCACGG
GCCTATGGCC ACCGTGGCAG CCTGTAG
|
|---|
| Protein sequence | MAFKIASSPH VRKDSQTSAV MQRVILAALP GLAVQCYFFG WGTFIQVCVA IATALAAEAL
VLKLRNRPIS PTLMDQSAVL TALLIGVAIP PLAPWYLVVI GTVFAIVMVK QLYGGLGQNL
FNPAMAAYVL LLVSFPVLMT TWAAPSTLAQ SSAGILDAID VIFSAQGAAD FALGIDGVSM
ATPLDTLKTD LSMGLTADES LKRAIFGGGS TGEGWFWVNL AYLCGGLFLL ATKTIRWHIS
GGLIGALFVC SLFGFGASPD THASPLFNLF SGATMLAAFF IATDPVTAAT SPRGRLLFGA
MIGVLIYLIR TFGGYPDGVA FAVLLANLCA PLIDYYIKPR AYGHRGSL
|
|---|
| |