| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1829 |
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| Symbol | |
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| ID | 4605978 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 2227669 |
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| End bp | 2229609 |
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| Gene Length | 1941 bp |
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| Protein Length | 646 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 639781205 |
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| Product | putative diguanylate phosphodiesterase |
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| Protein accession | YP_927704 |
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| Protein GI | 119774964 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0228515 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.151789 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAATTAG CCATGAGTTT GATAAAAACT TTCCCCATCG CACTTATTTT GCTCTTCGGT
AGTGCCGCAC TTTGGTTACA TCAAGAGAAC CTTGGCCTGA TGCAGGATGC TGGTAAGGCC
CTGGAAACAC AATATCGGAA CAAAACCACT GAATTGGCAT CCTGGCATGG TGATGGCCAG
GCGCTCTATC AACACCTGCA GCAATCGATC ACATTACAGT TTTTTCAATA CACCGATGGC
ACCGATGGCA GCCGCAACTT CACCACCGGA CAATTACAGG AAACCCCGGA ATCGTTTTTG
GCACGCCTGT TCCCCTTGGA AATAAGTGAT ACCCGAAACT TGCCTGACGG GCGACTCATG
GTGAAGTTGG ATACAAACGG CCCCAGGACA CTGGCGGTTA GCCTCTATTC AGAACAATTA
ATCATCATTG GCAGTTTATT TGCCGCTTCG CTGCTGCTGT TTTTGGCGTT GGCGTCTACC
TTATCCCGTA AAATCCGTTA CGCTGCAGAG TATGTAAAGT CGCTGACAGA ACTTAACTTC
TCTCCCCCTG AGCAGTCCAA ACTCGGAGGA GAACTCAAGC CCCTCGCCAC TGTATTTGAA
GAAGCCAGAC AAGCACTGAA GCAAAAGATT GATGGTTTGC ATCATGAAAA CGAGAAGCTG
TCCCGGGCTG CATTTCAAGA TCCCATTACC GGTTTTGGCA GCCGCGCGCG CTTTACCCGT
AAATTGGATG AATTGGCAAA GAGCCAAAAA GATTTGCTGG GTTCCCTCGC CATGCTGCAA
GCCACTGAAC TGGGTACTAT CAACCAGCTT AAAGGCCGTA CCGCTGGCGA CGATTATCTG
GCGAAAGTCG CCGGATGTTT GCGAAAGGCA GGCAGTCCCT TCCCCGACGC AGAGTTCTAC
CGGATTAGCA GTTCTGACTT TGCCGTGTTT TTGCCTAACC TGGTTATCAG TGACGCAGAA
CGCTTTTTGG AGCCCCTTAA AACCTTACTC GATGAATACC AGTCCACTTC TGCCATGGAG
TCAATAGCGT ATACCGGACT CGTGCCCTAC AAGAGCGGCG TTGACCCGGT AGGCCTACTC
AGTCTTTCTG ATGCGGCGCT CAGCATTGCT CAAACACTGG GCGCGAACAG TTTCCATGTG
CTTGAGAAGT TCACAGAGGA TCAGGAAATT GGAGATAACC GCTGGCAAGT GGCTATTACT
GAAATCATCA CCCAACGCGC AGTACGATTC TTTCAGCAGC CAATACAGCC CTGCCGCAGT
GAAGTGGAAG TCTACCGTGA ACTCTTTGCC CGCTTCTTTA ATTCAGAAGG TAAGGTTCTC
CCGACTGCCA CTGTGATAGC CATGGCTGAA AGGCACGGGC TGAGTCAGGA GCTGGATAAA
CTGGTCGTAC TCTCTGCTGT GCGCATGTTG CTGGATAATC CAAACATGAC CGGTGCCTAT
GGGGTCAATA TCAGCGCAGT GTCAGCGACC GATGATAATT TTGTGGTCTG GCTGAAAGAT
CTCTTGACCA AACACCGAGC CATTTCTAAC CGACTGGTAC TGGAAATCAA CGAAAGTGGT
CTCCAAACCA ATATGCAGGG CAGTTTCCGT TTCATACGTG AAATCCACAG TGTGGGGACC
AGGGTGTCCA TCGAGCGTTT CGGCATGGGC TTTACATCGT TCAAGTTTTT CCGGGAAGTC
AGACCCGACT ATATCAAGCT CGACGCCACC TACAGCGAAG CCATCGATCA AGACGCCAAT
AACAAGTTTT TTGTGCGCAT GATGATAGAC ATTGCCAGAC GTATCGGTGT CAGGGTCATT
GCCTGCGGTG TAGAACGTCA GGAAGAAAAG CTGACGTTAG AGAAGCTCAT GGTGGATGGT
TTGCAAGGTT TCTACATTGC CAAACCAGAA CCTGCCGGCA GCAAAGACTT GCTTGACGAG
AAACTCACCC GCCAGAGTTA A
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| Protein sequence | MELAMSLIKT FPIALILLFG SAALWLHQEN LGLMQDAGKA LETQYRNKTT ELASWHGDGQ
ALYQHLQQSI TLQFFQYTDG TDGSRNFTTG QLQETPESFL ARLFPLEISD TRNLPDGRLM
VKLDTNGPRT LAVSLYSEQL IIIGSLFAAS LLLFLALAST LSRKIRYAAE YVKSLTELNF
SPPEQSKLGG ELKPLATVFE EARQALKQKI DGLHHENEKL SRAAFQDPIT GFGSRARFTR
KLDELAKSQK DLLGSLAMLQ ATELGTINQL KGRTAGDDYL AKVAGCLRKA GSPFPDAEFY
RISSSDFAVF LPNLVISDAE RFLEPLKTLL DEYQSTSAME SIAYTGLVPY KSGVDPVGLL
SLSDAALSIA QTLGANSFHV LEKFTEDQEI GDNRWQVAIT EIITQRAVRF FQQPIQPCRS
EVEVYRELFA RFFNSEGKVL PTATVIAMAE RHGLSQELDK LVVLSAVRML LDNPNMTGAY
GVNISAVSAT DDNFVVWLKD LLTKHRAISN RLVLEINESG LQTNMQGSFR FIREIHSVGT
RVSIERFGMG FTSFKFFREV RPDYIKLDAT YSEAIDQDAN NKFFVRMMID IARRIGVRVI
ACGVERQEEK LTLEKLMVDG LQGFYIAKPE PAGSKDLLDE KLTRQS
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