| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1798 |
|---|
| Symbol | |
|---|
| ID | 4604048 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 2190329 |
|---|
| End bp | 2191021 |
|---|
| Gene Length | 693 bp |
|---|
| Protein Length | 230 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 639781164 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_927673 |
|---|
| Protein GI | 119774933 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2836] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.442592 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.18393 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACTACA GCCTTTCAGG CGCCTTTTTG GTCGGATTGA TGGGCGGAGT TCACTGCTTT
GGCATGTGTG GCGGCCTGTT GGGTGCCTTT TCCAGCCAAA TCCCAGCGCC GCCCCGTCAT
GAAAACCCCC TCGCCCATCG GCTCGGCTTC CTTTTGTCTT ACAATAGCGG CCGTATCGCC
AGCTACACTC TCGCTGGCGC CATCGCCGGT GGTGCCTCAG GCGGCTTAAG CCTGCTGTTT
GATGCGGGCC ATCTTACGCT GTTTCTGCGT TTTCTGGCCG GACTCATGAT GATTCTTCTG
GGGTTATACG TTGCCAAAAT CTGGTCTGGT GTTGTGTTCA TCGAAACGCT CGGCAAAGGA
CTGTGGCGTG TAATTCAGCC TTTTGGAAAA CGCCTTCTGC CCATAGACAC CCGCGCCAAA
GCCGTTCTTG CTGGCAGCGT ATGGGGCTGG TTGCCCTGCG GTTTGGTGTA TTCCACCCTG
ACCTGGTCTG TCGCCAGTGC CAATCCACTG GATGGTGCCC TTATCATGCT GTTTTTCGGT
CTGGGCACCT TGCCTGCACT CCTGAGTGTG GGCGTGGCGG CAAAGTCGCT GATGGGGTGG
TTACAACGCC GTGCTGTTCG CTGGTTATCG GGTGCACTGC TCATAGCCTT TGGGATTCAA
ACCTTATATA TTGGTGTCGC CCAGCTTGGC TAG
|
|---|
| Protein sequence | MDYSLSGAFL VGLMGGVHCF GMCGGLLGAF SSQIPAPPRH ENPLAHRLGF LLSYNSGRIA
SYTLAGAIAG GASGGLSLLF DAGHLTLFLR FLAGLMMILL GLYVAKIWSG VVFIETLGKG
LWRVIQPFGK RLLPIDTRAK AVLAGSVWGW LPCGLVYSTL TWSVASANPL DGALIMLFFG
LGTLPALLSV GVAAKSLMGW LQRRAVRWLS GALLIAFGIQ TLYIGVAQLG
|
|---|
| |