| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1723 |
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| Symbol | |
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| ID | 4603973 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 2107498 |
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| End bp | 2109351 |
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| Gene Length | 1854 bp |
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| Protein Length | 617 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 639781086 |
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| Product | signal peptide peptidase SppA, 67K type |
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| Protein accession | YP_927598 |
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| Protein GI | 119774858 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0616] Periplasmic serine proteases (ClpP class) |
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| TIGRFAM ID | [TIGR00705] signal peptide peptidase SppA, 67K type
[TIGR00706] signal peptide peptidase SppA, 36K type |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000437439 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0649195 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCAAAA AACCCCTGAC AACAAAAAAC ACCCTGCTTC TTATCTGGAA TACGATAAAT
TTCGTTCGTA AGCTGATAAT TAATATTGTA TTTTTTCCAA TTCTTATTCT GGTGTTGATT
GTTGGTATCG TCGCTTTAAG CACAGAAGAT GAGCTGCGTA TTGAATCCGG CAGTGCCTTG
GTGTTGGACC TATCCGGCAA TCTGGTTGAT CAGGCCAGGC GTGTCGATCC GCTAACCCAA
CTTATGCGTC AGGGCAATCA AAACAGCGAA GACACTGAAG TCCTGCTTTC AGACGTGCTT
TATGTCATCG AAAACGCGAC CCATGACGAA CGCATCGGCG CTATCGTGCT CGATCTTGGC
AATATGCGCG CCGGGATCAG TAAACTCACC GCTGTGGGCG AGGCTCTGAA CGGTTTTCGT
GAGACAGGTA AAAAGGTCGT GGCTATCGGC GATTGGTACA GCCGCAGTCA GTATTTCCTC
GCAAGTTATG CAGATGAGAT TTACCTCAAT CCCCGTGGTG AAGTCTTTAT CGACGGTTAC
GCCGCATATA ACCTCTATTT CAAGTCGGCT CTGGAGAAAC TTAAGGTTAA CACCCACGTC
TTCCGCGTAG GTACCTATAA GTCAGCGGTT GAACCTTATA TCCGCGACGA TATGTCACCG
GCGGCAAAAG AAGCCACCCA ACTCTTGATT GACGATCTCT GGGGTAGCTA TGCCGACACG
GTTGCGAAAA ACCGCGGCAT CGAAACCGGT GAACTGGTAT TGGATGCGGA CACTTATCTT
GCTCGCTTGG ACGCCAACGA CGGTGACAGC GCTGCGCTTG CTGTTAAGCA GGGTTGGGTA
GACGCCCTGA TGAGTGACGA GGCGTTTCGC TCCGCCATGG TTGAACTCGT TGGCGAAGAC
AAAGAAGAGC ACAGCTTCCG TCAGGTGGGT TTCCACGAGT ACCATAAACT GGTGAAACCT
CAGCCACAGT TTATGCCGGT AGACAGCGTG GGCGTTATCG TTGCCAAAGG CACCATACTC
AACGGTTTCC AGGCGCCTGG CGACATCGGT GGCAAGAGTA CATCCCAGTT AATTCGTGAT
GCCCGTTTTG ATGATTCCAT CAAGGCCTTG GTGTTACGTG TAGACAGCCC CGGCGGAAGT
GCCTTTGCCT CAGAAGAAAT ACGCCAGGAG CTTCTGGCAC TCAAGGCAGC GGGTAAACCT
GTAGTGGTGA GCATGGGCAG TATGGCGGCC TCCGGGGGTT ACTGGATTTC AGCCAGCGCC
GATTACATTT ATGCCACGCC CACGACGCTT ACAGGCTCCA TTGGTATCTT TGGCTTGATG
ACCACTTTTG AAGACTCATT GGCAGCCATT GGTGTGCATG CCGACGGGGT CGCCACCAGT
GAATGGGCCG CACACTCACC CTTCCGTCCG TTGTCACCCA AGCTTGAATC GGCCATTCAG
CGCAATATCG AGCGCGGTTA CAAGGAATTT ATCACTCTGG TCGCCAACGA ACGCGACATG
ACGCTGGAAC AGGTCGATGC CATCGCTCAG GGTCGCGTGT GGAGCGGTAA AAAGGCGCTG
GAACTTGGCC TGGTAGACGA GATTGGTGAT ATGCCTCAGG CACTGGCCAA AGCAGCCGAA
CTTGCTGGCA TGGCGACCTT TGACATTCAG TTGATTGAAC AGCAGATGTC GCCAGAAGAG
CTGTTTATTC AGGAAATGTT TGCCTCTGTG TCGGCCTGGC TGCCACAGCA GACACAACAG
AGTGACGTGG TGCAATCCTT GCTGCGTGTT TGGACCAGGA CGTTGCAGGA AATCGCCCGC
TTTGACGACC CCAAGGGGGT ATACCTCTAC TGCGAATATT GCCAGCTGCA ATAG
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| Protein sequence | MAKKPLTTKN TLLLIWNTIN FVRKLIINIV FFPILILVLI VGIVALSTED ELRIESGSAL
VLDLSGNLVD QARRVDPLTQ LMRQGNQNSE DTEVLLSDVL YVIENATHDE RIGAIVLDLG
NMRAGISKLT AVGEALNGFR ETGKKVVAIG DWYSRSQYFL ASYADEIYLN PRGEVFIDGY
AAYNLYFKSA LEKLKVNTHV FRVGTYKSAV EPYIRDDMSP AAKEATQLLI DDLWGSYADT
VAKNRGIETG ELVLDADTYL ARLDANDGDS AALAVKQGWV DALMSDEAFR SAMVELVGED
KEEHSFRQVG FHEYHKLVKP QPQFMPVDSV GVIVAKGTIL NGFQAPGDIG GKSTSQLIRD
ARFDDSIKAL VLRVDSPGGS AFASEEIRQE LLALKAAGKP VVVSMGSMAA SGGYWISASA
DYIYATPTTL TGSIGIFGLM TTFEDSLAAI GVHADGVATS EWAAHSPFRP LSPKLESAIQ
RNIERGYKEF ITLVANERDM TLEQVDAIAQ GRVWSGKKAL ELGLVDEIGD MPQALAKAAE
LAGMATFDIQ LIEQQMSPEE LFIQEMFASV SAWLPQQTQQ SDVVQSLLRV WTRTLQEIAR
FDDPKGVYLY CEYCQLQ
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