Gene Sama_1717 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_1717 
Symbol 
ID4603967 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp2101773 
End bp2103560 
Gene Length1788 bp 
Protein Length595 aa 
Translation table11 
GC content50% 
IMG OID639781080 
Productputative lipoprotein 
Protein accessionYP_927592 
Protein GI119774852 
COG category[S] Function unknown 
COG ID[COG4805] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.271095 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0681591 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAAAAAAA CTACGTTAGC CCTCGCCATT TCACTGGCCG CACTGTCTCT TGGCGCCTGC 
ACAGATAGCA CCACCTCAAG TGGTCATGTA CAACATGCCA CTGCCAGTAG TGTCACAAGC
CAACAGACTC AATCTTTTGC CTCCTTCAGT GAAGCCTTTA TCGATTCCCT CTGGCAAGTG
GCTCCGACCT GGGCACTCTA CAGCGGTTAT CACAAATACG ATGGCATCTT GGAAGTAGCC
GATGAGGCCC AGCGTGCCAA AACCCTCGCG TTTGTTAATT CCCAGCGTGA GATGCTACAG
GCCTTCAACA CAAAAAATCT CTCCACCAGT GAGTTGATTG ATTACCGCCT GATTGAAAAT
CTGCTCAATA GCGTCGAGTG GGAACAAACC CGTTTTCGTG CCTGGCAGTG GGATCCTTCC
GGTTACAATG TGGCAGGTGG CTTTGCACAA ATCATCAATG AAGATTTTGC GCCGTTGGAT
GAACGTTTGC GCTCTGTGGT ATCTCGTCTT GAGAATGTAC CCGCCTACTA TGAAGCGGCG
AGAAAAAATA TCAAAAATCC GACGCTGGAA CACACCGAGC TTGCATTGCT GCAGAATCAG
GGTGCGTTCT CTGTTTTTAA CGATGAGCTT ATTGCAAAAG TGGAGAGTTC TGGCCTTACG
GATGCCGAGA AAACACTGTT TAAACAGCGT TTTGATGCCG CAATTTCAGC GATAAATGAG
CATATCATTT GGCTCGAAAC CCTGAGCAAT AACCTCAAGG TCAATGGTGC CCGTGATTTT
CGTATTGGCG AAGCACTTTA CGAAGAAAAA TTTGCCCTGG ATATACAGTC GGGTATGACG
GCCAAGGCGC TTTACAATAA AGCCAGCGCC GATATGGTGC GGGTGCATGC TGAAATGGCC
AGGATCACCA AGGAGATTTG GAGCAAGTAC TTCACTGAGA CAATGCCCGA CGACTCAAAG
GTCGCGACGC GAATGCTGAT TGATAAGCTG TCGGCAAAGC ACGTGAAGCG TGAAGACTTT
GTGAATGAGG TGAGGGCGCA AATCCCAGAG CTGGTTAAAT TCGTCAATGA TAAACAGCTT
ATTACGCTCG ACCCCAATAA ACCACTGGTG GTACGCGAGA CACCGGAATA CATGCGTGGC
TACGCCGGCG CCTCTATCAG TGCCCCCGGA CCTTATGACA AAGGGGGCAA TACCTATTAC
AACGTGACTC CGCTGGATGG GATGTCGGAC GAATCTGCCG AGTCATATTT GCGTGAATAC
AATCACTGGA TTTTGCAGGT GCTCAATATC CACGAGGCGA TTCCGGGCCA CTACACGCAA
TTGGTGTATT CCAACGAGTC CCCCAGTCTG ATTAAGAGCC TGTTTGGCAA TGGCGCTATG
GTAGAGGGCT GGGCGGTATA CACAGAGCGG ATGATGCTGG AAGAGGGATA TGGCAACTTT
GAACCTGAAA TGTGGCTGAT GTATTACAAG TGGAACCTGC GGGTGATTGC CAACACCATT
TTGGATTACA GTATTCAGGT CAAGGGCATG ACACAGGAAG AGGCCATGAC GCTGATGATG
GAAGAGGCCT TCCAACAAGA GGCTGAAGCG GCGGGCAAAT GGCGCCGGGC GACCCTAAGC
CAGGTGCAGC TGACCAGCTA TTACGCCGGG TATCGGGAAA TCTACGACTT CAGAGAAGAG
CTCAAAGCCA AATCTCCCGA GAGTTTTGAT TTGAAAGCAT TCCATGAGCG TTTCCTGAGC
TTTGGCAGTG CGCCGGTCAA ATATATCCGA GAGTTAATGG TGAACTAA
 
Protein sequence
MKKTTLALAI SLAALSLGAC TDSTTSSGHV QHATASSVTS QQTQSFASFS EAFIDSLWQV 
APTWALYSGY HKYDGILEVA DEAQRAKTLA FVNSQREMLQ AFNTKNLSTS ELIDYRLIEN
LLNSVEWEQT RFRAWQWDPS GYNVAGGFAQ IINEDFAPLD ERLRSVVSRL ENVPAYYEAA
RKNIKNPTLE HTELALLQNQ GAFSVFNDEL IAKVESSGLT DAEKTLFKQR FDAAISAINE
HIIWLETLSN NLKVNGARDF RIGEALYEEK FALDIQSGMT AKALYNKASA DMVRVHAEMA
RITKEIWSKY FTETMPDDSK VATRMLIDKL SAKHVKREDF VNEVRAQIPE LVKFVNDKQL
ITLDPNKPLV VRETPEYMRG YAGASISAPG PYDKGGNTYY NVTPLDGMSD ESAESYLREY
NHWILQVLNI HEAIPGHYTQ LVYSNESPSL IKSLFGNGAM VEGWAVYTER MMLEEGYGNF
EPEMWLMYYK WNLRVIANTI LDYSIQVKGM TQEEAMTLMM EEAFQQEAEA AGKWRRATLS
QVQLTSYYAG YREIYDFREE LKAKSPESFD LKAFHERFLS FGSAPVKYIR ELMVN