| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1711 |
|---|
| Symbol | |
|---|
| ID | 4603962 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 2090903 |
|---|
| End bp | 2092486 |
|---|
| Gene Length | 1584 bp |
|---|
| Protein Length | 527 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 639781074 |
|---|
| Product | dihydrolipoamide acetyltransferase |
|---|
| Protein accession | YP_927587 |
|---|
| Protein GI | 119774847 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0508] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0253879 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTAAAG ATTTTATTTT GCCGGACATC GGTGAAGGTG TGGTCGAGTG CGAATTGGTC
GAATGGCTGG TGAAAGAAGG CGACCATATT GCTGAAGATC AGCCGATTTG TGACGTCATG
ACCGACAAAG CCCTGGTACA AATTCCGGCC CCGTTTGCCG GTGTAGTCAG CAAGCTTTAT
TACGCCAAGG GTGAAATTGC CAAAGTGCAT GCACCCTTGT ATGCCGTTGA AATGGAAGGT
GAGGGCACCG ATGCGTCAGC CGCTCCCGCC GAAGCCAATG CCCAAGCTGC GCACGATTCC
GTACCCGTTG CCGCTCCTGT GGCCGTTGCC GGTAAGCAGG TGGAAGATTT CTTGCTGCCC
GATATTGGTG AAGGCATTGT GGAATGCGAA CTGGTGGAGT GGCTGGTAAA CGAAGGCGAT
ACGGTTGAAG AAGATCAGCC CATTGCCGAC GTGATGACCG ACAAGGCGTT GGTACAAATT
CCCGCCCTGA AAGCGGGCAA AATAGTCACT CTGCATTATC GCAAAGGACA ACTCGCCAAG
GTGCATGCGC CGCTGTATGC CATCGAGGTG GACGCAGAGC ATCCGGTAGT CCCTCCTGCC
GCAGCGCCAG CAGCCGCAGC CAACCAGGCC GAGCGCGTTG CTCCGTCTAC CGCTGCTGTT
AATGGAAATG GCAAGGCGCT GGCAAGCCCC GCGGTGCGCC GCATGGCCCG CAGTCTGGAT
GTGGATTTGT CGCTGGTACC CGGCAGCGGT AAGCATGGCC GTGTGTATAA AGAGGATATA
GAGCAATACC TGAAGGGTGG CGCTGCACCA GCCCCTGTTG CCCAGACTGC GGCTCCTCAA
GCCGCAGTAA CTCAATCTGC GCCTGTGCTG CCTGCTGCCG ATGACAGGGT TGAGCCCATT
CGCGGCGTGA AAGCGGCGAT GGCGCGTCAG ATGATGGACT CTGTGTCCAG CATCCCGCAC
TTTACCTACT GTGAAGAAAT TGACCTGACT GAACTCGTTG CCCTGCGCGA GCGCATGAAG
GCCAAGTACA GCAGTGATGA TGTCAAGCTG ACCATGATGC CGTTCTTCAT GAAGTCGTTG
TCGCTGGCTC TTACCGAGTT CCCCGTGGTG AATAGTCAGG TGAATGCCGA TTGCACTGAG
CTGACCTACA AGGCCAGCCA TAACATTGGT ATGGCGGTGG ACTCCAAGGT GGGTCTGCTG
GTACCTAACG TGAAGGATGT GCAGAGCAAG TCGATTCTGG ATGTGGCCCG TGAAATCACC
CGCCTTACCG ACGCTGCCCG CAGTGGTCGT GTCAGTCCGG CGGACCTTAA AGGCGGTACC
ATCTCCATCT CCAACATTGG CGCTCTGGGC GGCACTGTGG CTACGCCTAT TATCAACAAG
CCTGAGGTGG CCATTGTGGC ACTGGGTAAG CTGCAGACTC TGCCGCGCTT TGGCGCCGAT
GGCAGCGTTC AGGCCCGCAA GATAATGCAG GTAAGCTGGA GTGGCGATCA CCGGGTGATT
GATGGCGGCA CCATTGCCCG CTTCTGTAAT CTGTGGAAGC AATATCTTGA GCAGCCAGAA
GACATGCTGC TCGCCATGCG CTGA
|
|---|
| Protein sequence | MIKDFILPDI GEGVVECELV EWLVKEGDHI AEDQPICDVM TDKALVQIPA PFAGVVSKLY
YAKGEIAKVH APLYAVEMEG EGTDASAAPA EANAQAAHDS VPVAAPVAVA GKQVEDFLLP
DIGEGIVECE LVEWLVNEGD TVEEDQPIAD VMTDKALVQI PALKAGKIVT LHYRKGQLAK
VHAPLYAIEV DAEHPVVPPA AAPAAAANQA ERVAPSTAAV NGNGKALASP AVRRMARSLD
VDLSLVPGSG KHGRVYKEDI EQYLKGGAAP APVAQTAAPQ AAVTQSAPVL PAADDRVEPI
RGVKAAMARQ MMDSVSSIPH FTYCEEIDLT ELVALRERMK AKYSSDDVKL TMMPFFMKSL
SLALTEFPVV NSQVNADCTE LTYKASHNIG MAVDSKVGLL VPNVKDVQSK SILDVAREIT
RLTDAARSGR VSPADLKGGT ISISNIGALG GTVATPIINK PEVAIVALGK LQTLPRFGAD
GSVQARKIMQ VSWSGDHRVI DGGTIARFCN LWKQYLEQPE DMLLAMR
|
|---|
| |