| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1700 |
|---|
| Symbol | |
|---|
| ID | 4603951 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 2080955 |
|---|
| End bp | 2082121 |
|---|
| Gene Length | 1167 bp |
|---|
| Protein Length | 388 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 639781063 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_927576 |
|---|
| Protein GI | 119774836 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4394] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00000144386 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0296487 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCAGTC CTAAATCCAG CCACTGGGAC ATCTTTTGTG CCGTTGTCGA TAACTACGGT
GATATTGGCG TTACCTGGCG CCTCTCAAAA CAATTGGCAC GGGAATATCA GCTGCCCATA
GTGCTTTGGG TGGATGACCT CAAAAGCTTT GCGCATATAT TGCCCACGCT TAACCCAACC
CTTGGCTCGC AAACCCTCGA AGGCGTCACC ATCAATCAGT GGAATATGCC GCTGAACATC
GATTACACCC CAGGCGCCGT GCTGATTGAA GCCTTCGCCT GTGAATTACC TGACGAGGTC
AAGGCCATAG CAAAATGCGC GCCCACACCA CCGCTTTGGC TCAATCTTGA GTACCTGAGC
GCAGAAGACT GGGTCGACGG TTGCCATGGG CTGCCCTCAT TACAAAGCGG CGGCATCAAC
AAATACTTTT ATATGCCCGG TTTTTCTGCC GCGAGCGGTG GTCTGATTTG CGAAAAGTCT
CTCTTTGATG AAAGGGATGC CTGGCAGGCC GACAGTGCCA ACAAGCTCAC TCTTTTTAGA
AGCCTGGGGC TGAGTGGCAT CAAAGCGGAT GACAAGATCG TCAGTCTCTT CAGCTATGAA
ACCCTGGCAC TGGAGGGCCT CTGTGCCCGT TGGCAAGCCT CATCGAGCCC AGTGCATCTG
CTGGTGCCCA AGGGACGCAG CCTGAACAGT TTGGCATCGT ATCTGCCCAA AGCCCCTGCC
GATATCGCAG CTGGTGAGCA GTTTTGTCAG GGTGCTCTTA CCATCCACAT ACTGCCGATG
ACAGATCAAA CCGGCTATGA TCGCCTGCTT TGGAGCGCCG ATTTTAACAT CATACGGGGC
GAAGACTCCT TTTTACGGGC ACAATGGGCG GGCCGTCCCT TTATTTGGCA CATTTACCAG
CAGGAAGAAG ACTACCACCT GGTAAAATTA GAAGCTTTTA TGCGCCTTTA CTGCGATAAT
CTGGCACCTG AGATTGCAGA TTGCTGGAAA AACTTGAACC TTGCGTTCAA TCAGCAACAG
GCGGATGCCG TGCAGCAGCA CTGGCAAAAT ATCGAATCTT TCGCTTTGCC TTTGTTGGCA
CACGCCAAAC AATGGCCAAT CGATGCACTT AAGACGACAG ATCTGGCAAC CAGGCTAGTG
CAATTCGTCA AAAAATCGTT AAGATAG
|
|---|
| Protein sequence | MTSPKSSHWD IFCAVVDNYG DIGVTWRLSK QLAREYQLPI VLWVDDLKSF AHILPTLNPT
LGSQTLEGVT INQWNMPLNI DYTPGAVLIE AFACELPDEV KAIAKCAPTP PLWLNLEYLS
AEDWVDGCHG LPSLQSGGIN KYFYMPGFSA ASGGLICEKS LFDERDAWQA DSANKLTLFR
SLGLSGIKAD DKIVSLFSYE TLALEGLCAR WQASSSPVHL LVPKGRSLNS LASYLPKAPA
DIAAGEQFCQ GALTIHILPM TDQTGYDRLL WSADFNIIRG EDSFLRAQWA GRPFIWHIYQ
QEEDYHLVKL EAFMRLYCDN LAPEIADCWK NLNLAFNQQQ ADAVQQHWQN IESFALPLLA
HAKQWPIDAL KTTDLATRLV QFVKKSLR
|
|---|
| |