Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_1678 |
Symbol | |
ID | 4603929 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 2051729 |
End bp | 2053432 |
Gene Length | 1704 bp |
Protein Length | 567 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 639781041 |
Product | hydrogenase large chain |
Protein accession | YP_927554 |
Protein GI | 119774814 |
COG category | [C] Energy production and conversion |
COG ID | [COG0374] Ni,Fe-hydrogenase I large subunit |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCCAAC GTGTTGTTAT CGATCCCATC ACCCGTATCG AGGGCCATTT GCGCGTCGAG GTCGAGGTAG ATGAGAACAA TGTGATTCAG AACGCCTGGT CCTCTTCCAC CCTGTGGCGC GGCATTGAGG TTATCCTTAA GGGCCGTACG CCCATGGACG TGGGCCTGAT TGTGCAGCGT ATTTGCGGTG TGTGTACCTA TTCCCACTAT CGCTGTGGTA CAGAAGCGGT GGAAAACGCC CTCGGGGTAA AAATTCCACT CAACGCCAAG TACCTGCGTT CACTGATGCA AACGTCGCTC TATATGCACG ACCATATAGT GCACTTCTAT CACCTCCATG GTCTCGATTG GGTGGATGTG GTGTCTGCAC TCAGTGCCGA CCCAGCCAAG GCCGCTCAGG TGGCGCTCAA GTACACCGAT AAGCCTATCG CGGCCGGTGA AGGTGAGCTT CGCGCCGTGC AGGAGCGGGT GAAAGGCTTT GTGGAAAAAG GCCAGCTTGG CCCCTTCGCC AATGCCTACT GGGGCAATGG CACCTATAAG TTTACCCCCG AGCAAAACCT GATTGCCCTG TCCCACTACC TCAAAGCGCT GGAAGTGCAG CGCGTGGCGG CTGAAATGCT CGCCATCTTT GGTGGTAAGC AGCCTCACCC ACAATCTCTG GTGGTGGGCG GCGTGACCTC AGTACGTGAC ATGTTAAGCC CTGCCCGTCT GCAGGAATGG AAGCAAAAAC ATGCCTATGT GACCGACTTT ATCAAACGTG CTTATCAGGC CGATATTGTC ATGGCTGCTG AAGCCTTCGG TACTGAGCCT TCAGTGCTTG GCGGCGTGAA CGTGAAAAAC TTCCTGGCCA CAGATGACTT CGTCCTAGCC GATGGCGAGT ACATGTTTAA CGGCGGCGTG ATAATGAACG GTGACCTGGC CGGTGTCAGC GACATCAACC CGGATTTGAT TGCCGAAGAC GTCACCCACG CCTGGTACAG TGCCGACAAC GCCCAGCACC CCTATGATGG CACTACAGTG CCTAACTATA CGGGCTTTGT GGAGCGTGAC ACCGTGTACG GCAAACTGCC TACCCTCGAT GGTGACGGCA AGTACTCCTG GGTGAAGTCG CCACGCTATA ACGGCGAGCC TGTGGAAGTG GGTCCACTCT CCAGCCTGCT GGTCAGTTAC GCCCGTGGCA ACAAGGTGGT CGTGGATGCC GTTAACGGTC TTCTCGCCCG CACTGGCCTG CCTGTGGAAG CGTTGTTCAC CACTCTTGGC CGCACTGCGG CGCGCATGCT GCAAACCGTG ATAGTGGCCG ATGAAGGTCT GCGTACCTTC GATGCTCTGC TGACCAACAT TCAGTCAGAC GAAGCCACCT ATGTGAAGCC TGAAATCGAT GCCAACAAAG AGTACGTTGG TCACGCCATG ATTGAAGCGC CTCGCGGTAT GCTGAGTCAC TGGATCCGCA TCAAGGGCGG TAAAGTCGAA AACTATCAGG CTGTGGTGCC CACCACCTGG AATGCGGGTC CCAAGGATGC CAACGGCAAG ATAGGCCCTT ATGAGGCATC GCTGATTGGC TTAAAGCTTG AGGACCCCAC CAAACCGCTG GAGGTCATCC GCATCATCCA CTCCTTCGAC CCCTGCATGG CTTGCTCGGT ACACGTAATG GACTTCAAGG GTGCAAGCCT GTCAGAGTTC AAGGTGTCAC CAAACGGGCT CTAA
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Protein sequence | MSQRVVIDPI TRIEGHLRVE VEVDENNVIQ NAWSSSTLWR GIEVILKGRT PMDVGLIVQR ICGVCTYSHY RCGTEAVENA LGVKIPLNAK YLRSLMQTSL YMHDHIVHFY HLHGLDWVDV VSALSADPAK AAQVALKYTD KPIAAGEGEL RAVQERVKGF VEKGQLGPFA NAYWGNGTYK FTPEQNLIAL SHYLKALEVQ RVAAEMLAIF GGKQPHPQSL VVGGVTSVRD MLSPARLQEW KQKHAYVTDF IKRAYQADIV MAAEAFGTEP SVLGGVNVKN FLATDDFVLA DGEYMFNGGV IMNGDLAGVS DINPDLIAED VTHAWYSADN AQHPYDGTTV PNYTGFVERD TVYGKLPTLD GDGKYSWVKS PRYNGEPVEV GPLSSLLVSY ARGNKVVVDA VNGLLARTGL PVEALFTTLG RTAARMLQTV IVADEGLRTF DALLTNIQSD EATYVKPEID ANKEYVGHAM IEAPRGMLSH WIRIKGGKVE NYQAVVPTTW NAGPKDANGK IGPYEASLIG LKLEDPTKPL EVIRIIHSFD PCMACSVHVM DFKGASLSEF KVSPNGL
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