Gene Sama_1676 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_1676 
Symbol 
ID4603927 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp2050294 
End bp2050851 
Gene Length558 bp 
Protein Length185 aa 
Translation table11 
GC content51% 
IMG OID639781039 
Producthydrogenase expression/formation protein 
Protein accessionYP_927552 
Protein GI119774812 
COG category[C] Energy production and conversion 
COG ID[COG0680] Ni,Fe-hydrogenase maturation factor 
TIGRFAM ID[TIGR00072] hydrogenase maturation protease
[TIGR00140] hydrogenase expression/formation protein 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.903036 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGTCC TGCTACTCGG CATTGGCAAT ATACTCTTCG CCGACGAAGG CGTAGGCGTA 
CACTTTGTCA ATTATATATC TGAAAATTAT CGCTTTACCC ACCCGCTCCA CTCCCTTGAT
ATTCTCGATG GCGGTACTCT GGCCCAGGGC CTGACTCCCA TTATTGCCAA ATACGACCAT
TTGATTGTGT GTGATACGGT CAACGCTCCC GGGGTTTCAC CCGGCGAAGT CTATTTTTTT
GATTTTGATG CAGCGCCCGC TGAAATTGAC TGGCAAGGCA GCGCCCACGA AGTCGAAATG
CTGCAAACAC TCACCATGAT GGAGATGCTG GGCGACCGGC CGAAAACCTT TGTACTGGGT
GTCACCCCTA CCGTGCTGGA ACCCATGCAT CTGGGACTTA CCGAGGCACT TGGCAGCGCT
ATTCCGGTAA TGGAACAGGC GCTGATTAAC CACCTGAAGC AATTGGGTTT CCAGTCTGAA
CGCATCGCCA ATAAACCCAT TACCAGTTTT TACCAAGACG GGATCACCCG CGAGGTATCA
GTGGATGAAA ACCATTAG
 
Protein sequence
MKVLLLGIGN ILFADEGVGV HFVNYISENY RFTHPLHSLD ILDGGTLAQG LTPIIAKYDH 
LIVCDTVNAP GVSPGEVYFF DFDAAPAEID WQGSAHEVEM LQTLTMMEML GDRPKTFVLG
VTPTVLEPMH LGLTEALGSA IPVMEQALIN HLKQLGFQSE RIANKPITSF YQDGITREVS
VDENH