Gene Sama_1649 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_1649 
Symbol 
ID4603900 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp2013924 
End bp2014433 
Gene Length510 bp 
Protein Length169 aa 
Translation table11 
GC content56% 
IMG OID639781012 
ProductPTS system glucose-specific transporter subunit 
Protein accessionYP_927525 
Protein GI119774785 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2190] Phosphotransferase system IIA components 
TIGRFAM ID[TIGR00830] PTS system, glucose subfamily, IIA component 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.778842 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGATTTT TCAGCCGAAT TCGGCGACTG ATTTCCGGGG CGCCAACCAT TGAAGGTGGC 
ATTGCCATAC TCGCGCCGGT TTCCGGCGAG ATTTATCCCA TAGAGAAGGT GCCCGACGTG
GTGTTTGCCG AGAAAATCGT CGGTGACGGC ATAGCCATTG CCCCAGAGGG AGACACCATC
TACGCCCCCA TTGACGGCAC CATAGGCAAA ATTTTCGAGA CCAACCATGC CTTCAGTATC
GAGTCCCCCC AGGGGCTGGA GTTGTTTGTA CACTTTGGTG TGGGCACGGT GGAACTCAGG
GGCAACGGCT TTAAACGTCT CGCCGAAGAA GGCCAGCAGG TGAAGGCTGG CGATCCCATA
CTGGCGTTCG ATTTGGAATA CCTTCGCGAA CACGCCGATA GCCTGCTTAC CCCCGTGGTG
CTGGCGAACA TGGAAGACAT CAAGTACCTG GAGAAATCCC AGGGCCGGGT CGAAGCCGGC
AAAGACGTGA TATTTACCGT CGAAATCTGA
 
Protein sequence
MGFFSRIRRL ISGAPTIEGG IAILAPVSGE IYPIEKVPDV VFAEKIVGDG IAIAPEGDTI 
YAPIDGTIGK IFETNHAFSI ESPQGLELFV HFGVGTVELR GNGFKRLAEE GQQVKAGDPI
LAFDLEYLRE HADSLLTPVV LANMEDIKYL EKSQGRVEAG KDVIFTVEI