Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_1641 |
Symbol | |
ID | 4603892 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 2006980 |
End bp | 2008167 |
Gene Length | 1188 bp |
Protein Length | 395 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 639781004 |
Product | polysaccharide biosynthesis protein |
Protein accession | YP_927517 |
Protein GI | 119774777 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0399] Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.00353213 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.359463 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCGGTT TTGAAATTTT TGGTCCTGAA GAAAAGCAGG AAGTCGCAGA TGTTATGGAG CACGGCTTTA CCTTCCGTTA CAACTTCGAT GGCATGCGCA ATGACCGTTG GAAAAGCCGC GACTTTGAAG CGCTCTTATG TGAGAAGCTG AATGTCAAAC ACGCTCACCT GCTCTCCAGC GGTACCAGTG CCCTCACTAC CGCGCTGATG GCAGCCGGCA TTGGTGCCGG TGATGAAGTG ATTGTGCCCC CCTTTACCTT CGTGGCCTCG GTTGAAGCCA TTATGATGGC GGGTGCGGTG CCTGTATTTG CCGAAATCGA CGAGACCCTG TGTCTGTCAC CGGAAGGCAT TCGTGCTGCC ATCACCCCAC GTACCAAGGC CGTTAACTTT GTGCACATGT GTGGCTCCAT GGGCCACATG GCTGAAATCA AAGCCATCTG TGATGAGCAT GGCATTATTC TGATGGAAGA TGCCTGTCAG GCCATCGGCG GCAGCTATCA GGGCCAGGCA CTGGGTACCA TTGGTCAGGT AGGTTGTTAT TCTTTCGACT CAGTGAAAAC CATTTCCTGT GGTGAAGGTG GCGCCGTAGT GACCAACGAC GAAACCATCT ACAACCACAG CCACATGTTC TCTGATCACG GCCACGACCA TATCGGTAAC GACCGCGGCG CCGAGAAGCA CCCCATCATG GGCATGAACT TCCGCATCAG CGAAATGAAT GCCGCACTGG GCCTGGCACA GCTGCGCAAA CTCGACACCA TCCTCGACAT TCAGCGTAAA AACAAAAAGC TGATTAAAGA TGCCATGGCC GAGATTGCCG AAGTCAGCTT CCGCGTGATT CCAGACCCAG AGGGCGACAA CGCAGGCTTC CTGTCATTTA TGCTGCCCAC CGAAGCACGC GCCCAGGAAA TCAGCAAGGC CCTCGCGGCC AACGGTGTTG ATGGCTGCTT CTACTGGTAT GTGAACAACT GGCACTACCT GAAGAACTGG GACCACATCC ACAACCTGAG TGCCCCGGCT GCCCTGCCCA TCACTCTGGT GGCCGACAAG CCTGACTACA CCCAGATTTC TGTACCCAAA TCTGACGCTA TCATGAGCCG TACTATTTCC ATGCTCATCA AGCTCAGCTG GACTGAAGAA CAGATCCAGG AACGTATTGC CAACATCAAG AAGGCCTTTG CCCAATAA
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Protein sequence | MPGFEIFGPE EKQEVADVME HGFTFRYNFD GMRNDRWKSR DFEALLCEKL NVKHAHLLSS GTSALTTALM AAGIGAGDEV IVPPFTFVAS VEAIMMAGAV PVFAEIDETL CLSPEGIRAA ITPRTKAVNF VHMCGSMGHM AEIKAICDEH GIILMEDACQ AIGGSYQGQA LGTIGQVGCY SFDSVKTISC GEGGAVVTND ETIYNHSHMF SDHGHDHIGN DRGAEKHPIM GMNFRISEMN AALGLAQLRK LDTILDIQRK NKKLIKDAMA EIAEVSFRVI PDPEGDNAGF LSFMLPTEAR AQEISKALAA NGVDGCFYWY VNNWHYLKNW DHIHNLSAPA ALPITLVADK PDYTQISVPK SDAIMSRTIS MLIKLSWTEE QIQERIANIK KAFAQ
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