Gene Sama_1641 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_1641 
Symbol 
ID4603892 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp2006980 
End bp2008167 
Gene Length1188 bp 
Protein Length395 aa 
Translation table11 
GC content54% 
IMG OID639781004 
Productpolysaccharide biosynthesis protein 
Protein accessionYP_927517 
Protein GI119774777 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0399] Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00353213 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.359463 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCGGTT TTGAAATTTT TGGTCCTGAA GAAAAGCAGG AAGTCGCAGA TGTTATGGAG 
CACGGCTTTA CCTTCCGTTA CAACTTCGAT GGCATGCGCA ATGACCGTTG GAAAAGCCGC
GACTTTGAAG CGCTCTTATG TGAGAAGCTG AATGTCAAAC ACGCTCACCT GCTCTCCAGC
GGTACCAGTG CCCTCACTAC CGCGCTGATG GCAGCCGGCA TTGGTGCCGG TGATGAAGTG
ATTGTGCCCC CCTTTACCTT CGTGGCCTCG GTTGAAGCCA TTATGATGGC GGGTGCGGTG
CCTGTATTTG CCGAAATCGA CGAGACCCTG TGTCTGTCAC CGGAAGGCAT TCGTGCTGCC
ATCACCCCAC GTACCAAGGC CGTTAACTTT GTGCACATGT GTGGCTCCAT GGGCCACATG
GCTGAAATCA AAGCCATCTG TGATGAGCAT GGCATTATTC TGATGGAAGA TGCCTGTCAG
GCCATCGGCG GCAGCTATCA GGGCCAGGCA CTGGGTACCA TTGGTCAGGT AGGTTGTTAT
TCTTTCGACT CAGTGAAAAC CATTTCCTGT GGTGAAGGTG GCGCCGTAGT GACCAACGAC
GAAACCATCT ACAACCACAG CCACATGTTC TCTGATCACG GCCACGACCA TATCGGTAAC
GACCGCGGCG CCGAGAAGCA CCCCATCATG GGCATGAACT TCCGCATCAG CGAAATGAAT
GCCGCACTGG GCCTGGCACA GCTGCGCAAA CTCGACACCA TCCTCGACAT TCAGCGTAAA
AACAAAAAGC TGATTAAAGA TGCCATGGCC GAGATTGCCG AAGTCAGCTT CCGCGTGATT
CCAGACCCAG AGGGCGACAA CGCAGGCTTC CTGTCATTTA TGCTGCCCAC CGAAGCACGC
GCCCAGGAAA TCAGCAAGGC CCTCGCGGCC AACGGTGTTG ATGGCTGCTT CTACTGGTAT
GTGAACAACT GGCACTACCT GAAGAACTGG GACCACATCC ACAACCTGAG TGCCCCGGCT
GCCCTGCCCA TCACTCTGGT GGCCGACAAG CCTGACTACA CCCAGATTTC TGTACCCAAA
TCTGACGCTA TCATGAGCCG TACTATTTCC ATGCTCATCA AGCTCAGCTG GACTGAAGAA
CAGATCCAGG AACGTATTGC CAACATCAAG AAGGCCTTTG CCCAATAA
 
Protein sequence
MPGFEIFGPE EKQEVADVME HGFTFRYNFD GMRNDRWKSR DFEALLCEKL NVKHAHLLSS 
GTSALTTALM AAGIGAGDEV IVPPFTFVAS VEAIMMAGAV PVFAEIDETL CLSPEGIRAA
ITPRTKAVNF VHMCGSMGHM AEIKAICDEH GIILMEDACQ AIGGSYQGQA LGTIGQVGCY
SFDSVKTISC GEGGAVVTND ETIYNHSHMF SDHGHDHIGN DRGAEKHPIM GMNFRISEMN
AALGLAQLRK LDTILDIQRK NKKLIKDAMA EIAEVSFRVI PDPEGDNAGF LSFMLPTEAR
AQEISKALAA NGVDGCFYWY VNNWHYLKNW DHIHNLSAPA ALPITLVADK PDYTQISVPK
SDAIMSRTIS MLIKLSWTEE QIQERIANIK KAFAQ