| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1573 |
|---|
| Symbol | |
|---|
| ID | 4603825 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 1916997 |
|---|
| End bp | 1917467 |
|---|
| Gene Length | 471 bp |
|---|
| Protein Length | 156 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 639780929 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_927450 |
|---|
| Protein GI | 119774710 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2947] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.000165437 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACTACT GGTTAATGAA ATCGGAGCCT GATGAATTCA GCATCCGAGA TCTGGCCGCC
AGGCCACAGC AAACAGAAGG CTGGCATGGG ATCCGCAATT ATCAGGCCCG CAACTTTATG
CGGGATGCCA TGAAGGTTGG TGACAGGGTA TTTTTCTACC ATTCCAGCTG CAAGGTTCCT
GCCATTGTCG GCGTCGCCGA AATCGCCAGC GACGTCTACC CTGATAGCAG TGCCTGGGAT
CCTGAGTCGG ATTATTTTGA TCCCAAATCC AGTCCTGATT CGCCCCGCTG GCTTCAACTG
GATATACGTT TTGTGAAAGA ATTTACAAAA CCTGTGACCC TCACAGCCAT CAAGAGTCAC
CCAGGGTTGA CCGATATGCT GTTGGTACAA AAAGGATCGC GGTTAAGTAT ACAGCCAGTG
GATGAAATCC ATTGGCAACT CATCCACCAG ATGGCTGGTG AATCCCTTTA A
|
|---|
| Protein sequence | MNYWLMKSEP DEFSIRDLAA RPQQTEGWHG IRNYQARNFM RDAMKVGDRV FFYHSSCKVP
AIVGVAEIAS DVYPDSSAWD PESDYFDPKS SPDSPRWLQL DIRFVKEFTK PVTLTAIKSH
PGLTDMLLVQ KGSRLSIQPV DEIHWQLIHQ MAGESL
|
|---|
| |