Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_1523 |
Symbol | |
ID | 4603775 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 1851761 |
End bp | 1853479 |
Gene Length | 1719 bp |
Protein Length | 572 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 639780873 |
Product | sodium/solute symporter family protein |
Protein accession | YP_927400 |
Protein GI | 119774660 |
COG category | [R] General function prediction only |
COG ID | [COG4147] Predicted symporter |
TIGRFAM ID | [TIGR00813] transporter, SSS family [TIGR03648] probable sodium:solute symporter, VC_2705 subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATGTTA AAACTCTGAC ATACCTGATT GTGGGGCTCT CATTTGCCCT CTATATCGGT ATCGCGATTT GGTCCCGTGC CGGTTCGACC AAAGAATTCT ACGTAGCCGG TGGCGGTGTT CCCCCTGTGA TGAACGGTAT GGCCACTGCG GCCGACTGGA TGTCTGCGGC GTCTTTTATC TCTCTGGCCG GTATCGTGTC CTTCGTGGGC TATGACGGCT CCGTATACCT GATGGGCTGG ACCGGTGGTT ATGTGCTGCT GGCGCTCTGT ATGGCTCCGT ATCTTCGTAA GTTTGGTAAG TTTACCGTAC CTGACTTCAT CGGTGAGCGT TACTACTCTC AGGCGGCGCG CACTGTGGCC GTGGTCTGTG CCATCTTCAT CTGCTTTACC TATATTGCAG GTCAAATGCG CGGTGTGGGC GTGGTGTTCT CCCGCTTCCT TGAAGTGGAC GTGGATACCG GCGTATACAT TGGTATGGCC GTGGTGTTCT TCTACGCTGT ACTCGGCGGC ATGAAAGGTA TCACCTACAC CCAGGTGGCC CAGTACTGCG TGCTTATCTT CGCCTTTATG GTGCCCGCCA TCTTCATCTC TGTGATGATG ACTGGTCACA TCATTCCTCA GCTGGGTTTC GGTGCCGAGC TGATTGATGC TGCCGGTAAC GGAACAGGTG TGTATCTGCT GGATAAGCTC GATGGTCTGT CTACCGAACT GGGTTTCTCC CAGTACACTG AAGGCTCCAA GAGCATGATT GACGTGTTTG CAATCACTGC GGCCCTGATG GTGGGAACTG CCGGTTTGCC ACACGTTATC GTACGCTTCT TTACCGTTCC TCGCGTAAAA GATGCCCGTT CAAGTGCCGG TTGGGCGCTG GTGTTCATTG CTATCATGTA CACCACAGTG CCAGCTCTGG CAGCCTTCTC ACGCGTGAAC ATGATTGAAA CCATTAACGG TCCGGATTCC ACTGGTGTGG CGTATGAGAC CGCACCGGGT TGGATTAAAA ACTGGGAAAA GACCGGTCTT ATCAAGTGGG ACGACAAGAA CGGCGATGGC AAGATGTACT ACACCAAGGG CGATGCCAAC GAGATGAACA TCGACCGTGA CATCATGGTG TTGGCGACCC CTGAAATTGC CAATCTGCCA GCCTGGGTAA TCGCTCTGGT GGCTGCCGGT GGTCTGGCTG CGGCCTTGTC TACTTCTGCC GGTCTCTTGT TGGTGATTTC AACCTCAGTA TCCCACGACC TGATGAAGAA AGGCTTTGCC CCCAATATCT CGGATAAGCA AGAGCTGCTC TACGCCCGTA TTGCTGCGGC AGTGGGTATC GTGATTGCCG GTTACTTTGG TATCAACCCA CCCGGATTCG TGGCAGCAGT AGTTGCGTTC GCCTTCGGTC TGGCTGCATC TTCACTGTTC CCCGCCATTG TGATGGGTAT CTTCTCCAAG AAGATGAACA AAGAAGGCGC CATCGCCGGT ATGGTGGTTG GTTTGGGCTT TACTGCGGCT TACATCGTTT ACTTCAAGTT TGTAAACCCT GCGGCTAACG TGCCTGCCAA CTGGCTGTTC GGGATCTCCC CTGAAGGTAT CGGTATGATT GGTATGCTGA TTAACTTTGC TGTAGCGGTT ATTGTCGCCA AGCTGACGTC TGCCGTACCT GCCCATGTGG AAGAAATGGT TGAAGGTATC CGTTTCCCTA AAGGTGCCGG TGGCGCACAG GATCACTGA
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Protein sequence | MDVKTLTYLI VGLSFALYIG IAIWSRAGST KEFYVAGGGV PPVMNGMATA ADWMSAASFI SLAGIVSFVG YDGSVYLMGW TGGYVLLALC MAPYLRKFGK FTVPDFIGER YYSQAARTVA VVCAIFICFT YIAGQMRGVG VVFSRFLEVD VDTGVYIGMA VVFFYAVLGG MKGITYTQVA QYCVLIFAFM VPAIFISVMM TGHIIPQLGF GAELIDAAGN GTGVYLLDKL DGLSTELGFS QYTEGSKSMI DVFAITAALM VGTAGLPHVI VRFFTVPRVK DARSSAGWAL VFIAIMYTTV PALAAFSRVN MIETINGPDS TGVAYETAPG WIKNWEKTGL IKWDDKNGDG KMYYTKGDAN EMNIDRDIMV LATPEIANLP AWVIALVAAG GLAAALSTSA GLLLVISTSV SHDLMKKGFA PNISDKQELL YARIAAAVGI VIAGYFGINP PGFVAAVVAF AFGLAASSLF PAIVMGIFSK KMNKEGAIAG MVVGLGFTAA YIVYFKFVNP AANVPANWLF GISPEGIGMI GMLINFAVAV IVAKLTSAVP AHVEEMVEGI RFPKGAGGAQ DH
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