Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_1516 |
Symbol | |
ID | 4603768 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 1844244 |
End bp | 1846289 |
Gene Length | 2046 bp |
Protein Length | 681 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 639780866 |
Product | DNA ligase (NAD(+)) |
Protein accession | YP_927393 |
Protein GI | 119774653 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.0000678531 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGGCC CCGCGCATTT CCAAGGTACC ATCATGCAAG TCAAAGCCGA AATTCAACGT CTTACCGCTG AAATCAATCG TCACAACATC GCCTACTATG TGCAGGATGC GCCAAGCATT CCCGATGCGG AATACGACCG GCTGATGAAC CAGCTCAAAG CGCTGGAAGC CGAGTACCCA CAGTTTGCCG AGCCCGACTC GCCCACCCAG CGTGTGGGCG GCGCAGCACT GAATAAATTT GAACAGGTCA GCCACTTGAA ACCCATGCTG AGCCTGGATA ATGCCTTTAA TGAAGAAGAC TTCGTCGCCT TCGATAAGCG CCTGACCGAT AAGGTGGGCT CCCAGGTGTA CTGCGCCGAG CCTAAACTCG ACGGCCTCGC GGTGAGCCTG ATTTACCGTA ACGGTGTGCT TGAGCGTGCC GCTACCCGTG GAGATGGCGC CGTCGGGGAA GATATCAGCG TCAATATGCG CACCATCAAG TCGGTACCAC TGAGACTGCA GGGCGATGAT ATTCCGGCAT TGGTGGAGGT GCGGGGAGAG GTCTTTATGC CAAGGGCCGC CTTTGAAGCG CTGAATGACC GCGCCCGTGC AAAGGGTGAC AAGCTCTTCG TCAATCCCCG TAACGCCGCC GCGGGCAGCT TGCGTCAGCT CGACAGCAAG ATAACCGCCG AGCGCTCACT GGCATTTTAT GCCTATGCGC TGGGTGTGGT GCAGGACGAC AATGGTGCCG ATTTGGTGCT GGCGCCCACC CACAAAGGCC AACTCGAGCG CCTTACAGCC TTCGGTTTGC CGGTGAGCAA GGAAGTGAAG CTCTGTGAAG GCCTTGCAGA GGTGATGGCC TACTATGCGG ATATCCTTAA ACGCCGTGAC GAGCTTGCCT TTGAAATCGA TGGCGTGGTG ATTAAGGTGA ACGACATCGA AGCCCAGCAG CAGCTCGGGT TTGTGGCCCG TGCGCCGCGC TGGGCTATCG CCTTTAAGTT TCCTGCACAG GAAGAGATGA CTGTGCTCGA AGGCGTTGAT TTTCAGGTGG GTCGTACCGG CGCCGTGACC CCTGTAGCCC GCTTAAAACC TGTGTTTGTG GGCGGTGTGA CCGTATCCAA TGCGACTTTG CACAACGGTG ATGAAATTGC CCGCCTTGGG GTGAAGATTG GCGATACCGT GATTATTCGC CGCGCCGGTG ATGTGATCCC GCAAATTGTG GCTGTGGTGC CTGAGCGCCG TCCTGATGAG GCGCAGGATA TCCTGTTCCC GGACAATTGC CCTGTCTGCG GCTCGCTGGT GGAGCGCATT GAAGGCGAGG CGGTGGCCCG CTGCAGCGGC GGGCTTTTCT GTGAAGCCCA GCGCCGGGAG GCCATCAAGC ACTTTGCATC CCGAAAGGCC ATGTATATCG ATGGCATGGG CGACAAGGTG GTTGAGCAGC TTATTGATAA AGAGCTGGTG GAAAGCCCGG CGGATCTCTT TAAGCTCAAT GTGTCAAAGC TGACCATGCT TGAGCGCATG GGCACCAAGT CGGCCACCAA TCTGGTGGCG GCCATTGAAG AAGCCAAAAC CACCACCTTA CCCAAGTTCC TCTATGCACT GGGTATTCGG GAAGTAGGGG AGGCCACGGC CGCCAACCTG GCGAAGCACT TTCGAAGCCT CGAAGCCATC AGGGACGCCG ATGTGGACGC CCTGATACAG GTAGAAGATG TGGGTACAGT GGTTGCTCAG CACGTGGCGC ACTTTTTTGC CCAGCCCCAT AACCTTGAGG TGATAGATGC GCTGATCGCG GCCGGGGTAA ACTGGCCTGC CATCGAAAAG CCATCCGCCG ATGCACAGCC GCTGCTGGGC CAAACCTGGG TGCTCACGGG GACGCTCACC AGTCTTGGCC GCACCGAGGC CAAGGCCAAG CTTGAGGCCC TTGGTGCCAA GGTGGCTGGC AGTGTGTCCA AGAATACCCA CTGCGTAGTT GCCGGTGAAG CGGCGGGCTC CAAGCTTGCC AAGGCCCAGG AGTTGGGTAT CCCGGTATTG GATGAAGCTG GTCTGATTGA GCTGATAGGC CTCTGA
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Protein sequence | MSGPAHFQGT IMQVKAEIQR LTAEINRHNI AYYVQDAPSI PDAEYDRLMN QLKALEAEYP QFAEPDSPTQ RVGGAALNKF EQVSHLKPML SLDNAFNEED FVAFDKRLTD KVGSQVYCAE PKLDGLAVSL IYRNGVLERA ATRGDGAVGE DISVNMRTIK SVPLRLQGDD IPALVEVRGE VFMPRAAFEA LNDRARAKGD KLFVNPRNAA AGSLRQLDSK ITAERSLAFY AYALGVVQDD NGADLVLAPT HKGQLERLTA FGLPVSKEVK LCEGLAEVMA YYADILKRRD ELAFEIDGVV IKVNDIEAQQ QLGFVARAPR WAIAFKFPAQ EEMTVLEGVD FQVGRTGAVT PVARLKPVFV GGVTVSNATL HNGDEIARLG VKIGDTVIIR RAGDVIPQIV AVVPERRPDE AQDILFPDNC PVCGSLVERI EGEAVARCSG GLFCEAQRRE AIKHFASRKA MYIDGMGDKV VEQLIDKELV ESPADLFKLN VSKLTMLERM GTKSATNLVA AIEEAKTTTL PKFLYALGIR EVGEATAANL AKHFRSLEAI RDADVDALIQ VEDVGTVVAQ HVAHFFAQPH NLEVIDALIA AGVNWPAIEK PSADAQPLLG QTWVLTGTLT SLGRTEAKAK LEALGAKVAG SVSKNTHCVV AGEAAGSKLA KAQELGIPVL DEAGLIELIG L
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