Gene Sama_1488 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_1488 
Symbol 
ID4603740 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp1802387 
End bp1803274 
Gene Length888 bp 
Protein Length295 aa 
Translation table11 
GC content57% 
IMG OID639780838 
Producthypothetical protein 
Protein accessionYP_927365 
Protein GI119774625 
COG category[R] General function prediction only 
COG ID[COG1090] Predicted nucleoside-diphosphate sugar epimerase 
TIGRFAM ID[TIGR01777] conserved hypothetical protein TIGR01777 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.246079 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACATAT TACTGACAGG CGGCACAGGT TTTATAGGTC GGGCACTGGT CAGTGCCCTG 
TCTGAACATC AACTCACCAT CCTCACCCGG GACACAGGCG CCGCAGCTGA GTTATTGGGC
GAGCAGCACC ATTACCTGCG CTCCCTCGAT AAACTGGAAA ACCTCGATGG TTTCGATGCC
GTCATCAACC TCGCAGGCGA ACCCATAGTC GGTAAACGCT GGAGCGACGC CCAGAAAAAA
CAGCTCTGCC ACAGTCGCTG GGATCTGACT GCCTTGCTCA CCGGTCTTAT CCAGCAAAGC
AGCGAACCGC CTGCGGTGTT TATCAGCGGT TCGGCTATCG GCTATTACGG TGCCCAGGGC
AGCCAACCGC TCACCGAATC TTCAAGTCCC CACAGTGAAT TTACCCACAT GCTCTGTGAA
AAATGGGAGC AACTGGCGCT GGACGCAACA AGCGACGTGA CCCGGGTGTG TATTCTGCGC
ACCGGTATTG TGCTTGGAAA ACACGGCGGC GCCCTGGCCA AGATGTTGCC CCCCTTCAAA
CTCGGTTTGG GTGGCCCCAT TGGCAGTGGT CAACAGGGCA TGAGCTGGAT CCATTTGGCC
GATATGATTG GCCTGATACG TTTCCTGCTA ATCAACCCCA AATGCAGTGG CATCTTTAAC
GCGACGGCTC CGAATCCCGT CAGCAACCGG GTCTTCTCCC AAACACTGGG CGAAGTGCTT
CACCGCCCAG CCCTGCTCCC GGCACCCGCC TTTGCCCTCC ATGCCCTGCT GGGGGAAGCC
GCCATCATGG TGCTTACCGG TCAGTACGTG CACCCGCAGA GGGCAATGGA GGCTGGGTTC
GGCTTTCGCT TTCCCTATTT GCGTCAGGCG CTGGAAGATC TGCTTTAA
 
Protein sequence
MNILLTGGTG FIGRALVSAL SEHQLTILTR DTGAAAELLG EQHHYLRSLD KLENLDGFDA 
VINLAGEPIV GKRWSDAQKK QLCHSRWDLT ALLTGLIQQS SEPPAVFISG SAIGYYGAQG
SQPLTESSSP HSEFTHMLCE KWEQLALDAT SDVTRVCILR TGIVLGKHGG ALAKMLPPFK
LGLGGPIGSG QQGMSWIHLA DMIGLIRFLL INPKCSGIFN ATAPNPVSNR VFSQTLGEVL
HRPALLPAPA FALHALLGEA AIMVLTGQYV HPQRAMEAGF GFRFPYLRQA LEDLL