| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1481 |
|---|
| Symbol | |
|---|
| ID | 4603733 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 1791012 |
|---|
| End bp | 1794314 |
|---|
| Gene Length | 3303 bp |
|---|
| Protein Length | 1100 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 639780831 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_927358 |
|---|
| Protein GI | 119774618 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.342651 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGCAAAAC GCGCTGTTCG CCTGCTTGGG ATCTTGCTCC TGTGCTTGCT GCTGCTCATC
TCGGGCTGTG CGGCGGTCCT GTGGTATCAG GGCAAAGACT GGCTGACATC CCTTGCCAGA
CAGGAACTGG CCAAATCCGG TATTACCCTC AACAGCCTTG CCTGGCGGCT CGAGCCCCAG
GGCATCACCC TCGAAAACCT CAATCTGGAC ATCGAAGACA GTCGCCTGCA ACTCACCGGA
TTGCGCATCA CCTTCGACAC ACCCCTTACC GAACTCACTC AGAAGCTCAT CAGCGACTAT
GTCAAAGGCG AGCTGAGTCT GCCCCTGCCC CAAAGTATTG CACTGGAACA CAGCTATGTG
TTTCTGGGCA GCCGCTCACT GATGGCCGCA GGTACGCATC AGGCCGATGA CAGGCCCGCG
GTGGCGCTGA ATTTGAACAA GCTGCCCCAT ATTGCACTGG GGCCTGTGGA GATAGATACC
CAACAAGGCA AGCTGTTGCG ACTGGAGTAC CTGTCGCTCA GTGAAGACAG ACGCCTTTTC
AGCCGCATCG CTAACCCCGA TGGCAATAAA ATACTGGATT TACATGCCAA TCTGGGGAAC
GACGCTTGGC AAACTGAGCT GGGGTTATCG CTGCCTGCCG CCCATGAGTT AACGAAACGA
CTGGCCGATA CGGCCCTGCC CATCACACCG GACAACCCGC TGTTTGGCTT TTTGCAGCAG
GTACGTGTGC TTGAATCCAG ACTAGGCCCC TCCGTCACAG GCGAGCTGGA TATCCAAAGC
AGCCTCACCC TGAAAACGGC AGCGCTCAGG AGTAAGCTTC ATCTCAAGGA GGCTGGCCTC
ACTCTCGGTG CGCTGGAGCA AGTCTATTTC AGCCTGAGCG ACACCCTACT GACGGCAAAT
ATCGATGCAG GAATGGCCCG TGTCCAATTA AGCCCGCTGC GGATTAACAC CACATTGAGC
CATTCCCAGC GCAAGGCGCT GCTGGCGGTA TTGGGCCCCG AGCCTGCCCC TGATTCCCAC
GTTCAGACAA CCCCGGACGC TGCGTCAAGC GCCGCAGACA CTGAGACCAA CCAAGCCTGG
CTGGCAGCGC TCGACTCGGC GCTGTTTGAC GCAAAACCGC TCAGCCTGAG CCTCACTCTG
CCAAACGGCA TTTCCATCAC AAGTGGTGAG CCTGTGTCTG CCCACATCGT TGCCGATGCC
AGCGCTGGCC CATGGCAGCT GGCAATGGCC GCAACCCCCA CACTGAATGG CGATTTACGC
GAGCCACTTG ATGACCTTAG AAGCCCCCTT GAGATAAAGC TTGCCCATAG CGGCGAGCTG
AACCTCAGCG ACCTGCTGTC CAGCCTCGGC CTGACACTGG CGACGGATGC AGACCAGACA
GCAAGCATCA GCCTCGCTAA GCCTCAGTTG GCCCTGACGG CTCAGTTAGC GTCACTATCT
GCCTCACTAT CTGCCTCACT ATCTGCCTCA AAATCTGCCT CAAAATCTGC CTCAAAATCT
GCGTCAAAAT CTGCGTCAAA ATCTGCGTCA AATTCCGCAT CACAGCCGAC TTCACAACCG
GTTTCAGAAC AAGCATCCCA GCCAACATCG CAGAAAAACA GTGGGGAGAG CGCCGCAGAG
ACAGGGAGCC TGACCCGTGG GGTGGCAGCC ACAGCCAACA AGGCAGGCAA TGCCAGCAGC
TCAACCATCA TTGGGCTTGA GCTTGATGCA TTCAGCCTGG GTTTTGACAG CGTCGCTCTG
AACGCCACAA ACACAGAGAA CCTGTACCAG CTGAGTTTGG GTGAAAGCCA GCTTCATCTG
AATAAAGACC CCGCCAGCCC CATCACTGCA AACTACCGCC CTGCCACGGC GTCCCATCCG
GGGGCGCTTG ATGTGGCGCT GGGAGTAAAC CACGCACAGC CGCAAAAGAC AGCGCTTGAA
TTGAGGTTAC GGGGCGTGTC AGTCAGCCAA AAATCCCTAA CTCAGGCGGA TTTGGCGCAA
ACGCAAGCTC AGACCCTGCT CAAGCTCGAT GTGGGTGACA TCACCTTAAG CTCTGCTCTA
CAAAAGCCCT TGGCATTGTC ACTGCCATTA CACTTTGCAA CCAAACAGAG CGCTCAGGTC
GAACCGCTGT TATCAGCCAT GCCGAAGCTC GCCTCAACCC TGCACCTTAG CGACATCAGG
GCGCAGCGGC AGGTGCCACG CAGTGCCGGC AGTAAGCGCC TCAAAACCAC CCGCCTCGAT
GTGGACTGGG TCGAACTAAA GCAGCAGCTC ACAGCAAAAC CTGGACAAGT GCAAACCGCT
GAGCAGTGGC AACTCGGGCA ACATCAGCCG ATACGACTAC AAAGCCAGCA CCGACTTGGC
TTAAAAGCAG GTACTGTGCA AACGCTTAAT GCCAGTTGGC AGGGCGATAA CAGTCTTGGC
AATTGGCGTG AGGCCCTGGC TGGCAGCCTG AATTTTTCAA GTGACATTCC TCTTTCCGGC
GATACTCACC TCAGTGCACA GATAGCGCTG GATATGGCCA AACAAACCAC AGATCTTCGG
CTGAAAACCG ACTTATCAGC GCTTGAAGGC AGCGTGGGCA GTTATCCGTT TCGGGGCGGC
AACCTCAGTG CCACTTGCGG CCTCTTTCAG GACAAACGTC GTGACAGTGA TTTTCGCCTG
GGCTGCGACA ACCTGAGCTG GTCTCTCGCC CATTTTCAGC CGGGCATCAT CCTCAGCGAC
ATTAGTGGTC AGGGCACGCT TGCGCTGCAA AGCGCTGAGG ACGGCACCTT ATCCGAGTTT
GATATCGATC TGACCAGCCG GGGCAAACTG CTGGAAGGCG AATTTTTGCT GCCCCAGTTC
AAACTCAATC TCAAGCAACC CTCCCATGCC TATCTGGTGC TGACGGGGCT CAGCCTCGAA
GAGCTGCTGG CGCTTCAACC GGTAGAAGGT ATCCGCGCGG ACGGCATCTT TGATGGTGTA
CTGCCGGTGG ATGTGCGAGA ACGCAAGGTC AGCGTCAGTG GCGGCCGCAT TGCCGCCCGC
GCACCGGGAG GCCTGATTGA AGTCTCCAAC AACCCGGCGG TGGATGAACT GGTGGCTTCA
CAGCCCCACC TGGCGCTGGT ATTTGATGCC CTGAAGCATC TTGATTATTC GAGCCTCGCC
GGTAGCTTCG ACATGGTGGA TAGCGGCGAT GCCCTCATCA GTATCGAAGT AAAGGGTAAG
AGTGAGGGCA TTGAACGCCC TATACACTTG AATTACTCTC ATGAAGAGAA CTTACTGCAG
CTTTTTCGCA GCCTGACCAT AAGCGAAAAG CTACAAAGTC ATATTGAACA GAGTGTTAAC
TGA
|
|---|
| Protein sequence | MAKRAVRLLG ILLLCLLLLI SGCAAVLWYQ GKDWLTSLAR QELAKSGITL NSLAWRLEPQ
GITLENLNLD IEDSRLQLTG LRITFDTPLT ELTQKLISDY VKGELSLPLP QSIALEHSYV
FLGSRSLMAA GTHQADDRPA VALNLNKLPH IALGPVEIDT QQGKLLRLEY LSLSEDRRLF
SRIANPDGNK ILDLHANLGN DAWQTELGLS LPAAHELTKR LADTALPITP DNPLFGFLQQ
VRVLESRLGP SVTGELDIQS SLTLKTAALR SKLHLKEAGL TLGALEQVYF SLSDTLLTAN
IDAGMARVQL SPLRINTTLS HSQRKALLAV LGPEPAPDSH VQTTPDAASS AADTETNQAW
LAALDSALFD AKPLSLSLTL PNGISITSGE PVSAHIVADA SAGPWQLAMA ATPTLNGDLR
EPLDDLRSPL EIKLAHSGEL NLSDLLSSLG LTLATDADQT ASISLAKPQL ALTAQLASLS
ASLSASLSAS KSASKSASKS ASKSASKSAS NSASQPTSQP VSEQASQPTS QKNSGESAAE
TGSLTRGVAA TANKAGNASS STIIGLELDA FSLGFDSVAL NATNTENLYQ LSLGESQLHL
NKDPASPITA NYRPATASHP GALDVALGVN HAQPQKTALE LRLRGVSVSQ KSLTQADLAQ
TQAQTLLKLD VGDITLSSAL QKPLALSLPL HFATKQSAQV EPLLSAMPKL ASTLHLSDIR
AQRQVPRSAG SKRLKTTRLD VDWVELKQQL TAKPGQVQTA EQWQLGQHQP IRLQSQHRLG
LKAGTVQTLN ASWQGDNSLG NWREALAGSL NFSSDIPLSG DTHLSAQIAL DMAKQTTDLR
LKTDLSALEG SVGSYPFRGG NLSATCGLFQ DKRRDSDFRL GCDNLSWSLA HFQPGIILSD
ISGQGTLALQ SAEDGTLSEF DIDLTSRGKL LEGEFLLPQF KLNLKQPSHA YLVLTGLSLE
ELLALQPVEG IRADGIFDGV LPVDVRERKV SVSGGRIAAR APGGLIEVSN NPAVDELVAS
QPHLALVFDA LKHLDYSSLA GSFDMVDSGD ALISIEVKGK SEGIERPIHL NYSHEENLLQ
LFRSLTISEK LQSHIEQSVN
|
|---|
| |