| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1421 |
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| Symbol | |
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| ID | 4603673 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 1730065 |
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| End bp | 1731129 |
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| Gene Length | 1065 bp |
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| Protein Length | 354 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639780771 |
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| Product | HlyD family secretion protein |
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| Protein accession | YP_927298 |
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| Protein GI | 119774558 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0100677 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAGCCC GCAAATCATT CAAACTCGCC CTCCCCTTAC TGCTTGTTGG TGTACTCGCC
GCCTGTGGAC AGGAAGAAGC CAAGAAGGAA GAAGAAAAAT ACGCCATACC TGTTGAAACC
CAGTTAGTGG TTCAGGGCAA TGTTTCCTCA TTCTATTCCA CCACCGCCAC CCTCGAAGCA
CCGGTCGAGG CCCATGTTGT GACCCGTATC GCTGGCCTGA TAGAAGCCCT GCACGTAGAA
GAAGGCGACA GAGTCAAACA AGGGCAATTG CTGGCCGTCA TCGACGCCAA GCGTCAGCAG
TATGAGCTAG ACCGCTCCGA AGCCGAAGTG CTCATCATCG AGCAAGAGCT AGCGCGGGTG
AAAAAGATGA AGAGCAAAGA CTATGTCAGC GCCGACTCCA TCGCCAAACT CGAATACAAC
CTGCAGGCCG CCAAGGCGCG CCTGGACCTG GCGAAACTGC AGGTTAAAGA GAGCCAAATC
GTGTCCCCCG TGGATGGCAT CATCGCCAAG CGCTTCGTTA AAGCCGGCAA CATGGCCAAA
GAATTCGAAG AGCTCTTCTA TGTGGTCAAT CAGGACGAGC TTCACGGGAT AGTGCATCTG
CCGGAGCAGC AGCTCTCCAG CCTGCGTCTT GGACAGCATG CCGATATCTA CGCCAGCGGT
CAGAAAAACC AGGCCGTGAA TGCCGAAGTA CTGCGCATCA GCCCGGTCGT TGACGCCCAG
AGCGGCACCT TCAAGGTCAC GCTCAAGGTG CCCAATCAAA ATGGCATCCT TAAGTCGGGT
ATGTTTACCC GGGTGGAACT TAAGTACGAC ACCCATGAAA ACGTCATCAC AGTGCCTTAC
AACGCCATCA TCAACCAGGA TAACAAGCAA ACCCTGTATG TTGTCCAGGA CACCACGGCC
GAGCGTCGCG AAGTAGAGCT GGGTTATCGT GAAGGCAACA TGGTTGAAGT CGTTGCGGGT
ATTGCTCCCG GAGAGCATCT GGTGATCCGT GGGCAGCAAA ACCTCAAAGA CCAGTCGCTG
GTTGAAATCA TCACCCCACT GGATGTGGCT TCGGTTAAAA AATAA
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| Protein sequence | MEARKSFKLA LPLLLVGVLA ACGQEEAKKE EEKYAIPVET QLVVQGNVSS FYSTTATLEA
PVEAHVVTRI AGLIEALHVE EGDRVKQGQL LAVIDAKRQQ YELDRSEAEV LIIEQELARV
KKMKSKDYVS ADSIAKLEYN LQAAKARLDL AKLQVKESQI VSPVDGIIAK RFVKAGNMAK
EFEELFYVVN QDELHGIVHL PEQQLSSLRL GQHADIYASG QKNQAVNAEV LRISPVVDAQ
SGTFKVTLKV PNQNGILKSG MFTRVELKYD THENVITVPY NAIINQDNKQ TLYVVQDTTA
ERREVELGYR EGNMVEVVAG IAPGEHLVIR GQQNLKDQSL VEIITPLDVA SVKK
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