Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_1400 |
Symbol | |
ID | 4603652 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 1698830 |
End bp | 1699828 |
Gene Length | 999 bp |
Protein Length | 332 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 639780750 |
Product | periplasmic binding protein/LacI transcriptional regulator |
Protein accession | YP_927277 |
Protein GI | 119774537 |
COG category | [K] Transcription |
COG ID | [COG1609] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.665266 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.0917942 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCACAA TTTATGACGT TTCCTTTCTG GCAGGCGTGT CGCTGGCGAC CGTCTCCAGG GTGGTGAACA ACACCGGCAA AGTCAGTGAC AAGACCCGTC AAAAGGTCCA CGATGCCATG GCAAAGCTGG ACTACCGCCC CAATACCATC GCTCAGTCTT TGGCCTCCAA CCGCTCCAAC AGTATTGGTG TGCTGGTGTC ACAGCTGGAT GGTCCCTTCT ACGGCCCCAT GATGCGGGAG GTGGAGTCGG CACTGCGCGC TGCCAATAAG CACGTTATCA TCGCAGCCGG CCACAGCGAT GCGGCACAGG AAAAAGATGG TGTTGAGTTT CTGCTGTCCC GGGGGTGTGA TGCCCTGATT GTGGATGCCG AAATTCTCTC CAACGGCTAT TTGGTTGAGC TGTGTCAGGG GAAAACCCCG GTGGTGCTCA TAAACCGGCA TGTGGATGGT ATCGATGAGC GCTGCGTACA CCTGAATAAC CTTCAGGGTG GTTTGCTCGC CAGCCGCCAT GTTCTGGAAA AGGGCCACAA ACAGATAGCC TATATCTCCG GGCCGCTGTT TAAGCTCGAT GCCAGAGAAC GTCTCGAAGG CCATCGTCAG GCATTGGCAG AGCAAGGCAT CGCCTTTGAC GAAAACCTCT TTTATGAAGG GGACTTTCGT GAAGAAGGCG GCTATGAGGC CATGGCTCAG TTGCTCTCAC GGGGGCGGGA CTTTACTGCC GTGGTGTGTG CAAACGATCA GATGGCATCG GGTGCCATAG CCCAGTGTTT GGAGCGGGGT CTGCGGGTGC CCGAAGACAT CTCCTTCGTG GGATTCGATA ATATCCCCTT CCCCCGTTAT ATCTCGCCCA AACTGACCAC TGTGTGTAAC CCCATTCAGG ACATGGGACG CATGGCGGCC CACTGGGTGC TGCGCGAAGT GTACGACCAA ACCGACGTGA CGTTTTGCCA CCGCTTTGAG CCGGAGTTGG TGGTTCGGGA TTCTGTTATC ACACGTTAA
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Protein sequence | MATIYDVSFL AGVSLATVSR VVNNTGKVSD KTRQKVHDAM AKLDYRPNTI AQSLASNRSN SIGVLVSQLD GPFYGPMMRE VESALRAANK HVIIAAGHSD AAQEKDGVEF LLSRGCDALI VDAEILSNGY LVELCQGKTP VVLINRHVDG IDERCVHLNN LQGGLLASRH VLEKGHKQIA YISGPLFKLD ARERLEGHRQ ALAEQGIAFD ENLFYEGDFR EEGGYEAMAQ LLSRGRDFTA VVCANDQMAS GAIAQCLERG LRVPEDISFV GFDNIPFPRY ISPKLTTVCN PIQDMGRMAA HWVLREVYDQ TDVTFCHRFE PELVVRDSVI TR
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