| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1396 |
|---|
| Symbol | |
|---|
| ID | 4603648 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 1688784 |
|---|
| End bp | 1691438 |
|---|
| Gene Length | 2655 bp |
|---|
| Protein Length | 884 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 639780746 |
|---|
| Product | glucan endo-1,3-beta-D-glucosidase |
|---|
| Protein accession | YP_927273 |
|---|
| Protein GI | 119774533 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2273] Beta-glucanase/Beta-glucan synthetase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0000905888 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0353451 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGATGA AGAATTCTGG AACGAGCAAG TACCTTTCCC TTGGACTGCT TGCGGCGGCG
CTGCAGGGGT GCGGGGGGGA TACCAATACC AGCACCGATT TGGGCTCGGT CAACCTTGAA
GGTCCGGCAA CCGGTTGGGA GCTGGTGTGG AGCGACGAGT TTGACGGCAG CAGCATAGAC
GCGGCCAAGT GGGCGCATGA CGTGGATTGT GCCGGAGGCG GAAATCAGGA GTCTCAATGC
TATACCGCAG ATGAAGCTAA CTCCTTCGTT GCCGATGGTA TGCTGAACAT AGTGGCGCTG
AAGGCGCCCG AGGGTGCTGA AAAGCCTTAT ACCTCAGCAA GACTGACAAC CAAAGGCAAG
GCGGATTTCA CTTATGGCCG CTTTGAAATG CGGGCGAAAT TACCGTCGGG GCAGGGCAGC
TGGCCTGCCT TCTGGATGCT GCCTACCGAC AATGTCTACG GCATCTGGCC CCGAAGCGGC
GAAATCGATA TTGTGGAAGC GGTAAATCTT AAAGCCGCCA CCGTAGAGGG AACCCCTGAA
GCCTACGTCC ACGGAACCCT TCACTACGGC CGTGAGTGGC CCAAGAACGA GCAATCAGGC
AAAGCCTATC TGCTGCCCAA TGGCGTCAAT CCTGCCGATG ATTTTCATAC CTATGCCATT
GAGTGGCAGC AGGGGGAAAT CCGCTGGTAT GTGGACGACT ACCTCTATGC CACTCAGCGG
CGCTCCGAAC TGAGGTACAA CTCCAAGGGG CAGGCGGTTG GTCTGGCTCA CAAAGGCTGG
TTTACCGAAT ATTACGATCA ATCCAGTGGC GACCTGCAGC TCAGTTGGAC AGATGCGCCA
TTTGATGAAA AATTCCATCT CATCGTTAAC TTCGCTGTGG GTGGCAACTG GCCAGCCTCG
GTAAACGAAA CCGGTATCGA CGATACCGCC TTTAACGAGA ACAACAGGTA TCAAATTGAC
TTTGTCAGGG TTTATGAATG TGCTGCCAAC CCTGATACCG GCAAGGGCTG TGAGACTGTG
CGCCCGGGCT ATGACAACCC AGATGATGCG CTGGTGGAAG GTAAAGCCCC CGTGCCTGTA
CCGCCTTCTG ATGGTACGCC AAAAGATCTG CTGATTTTTG ACAGCACCCC CAACCCCAAC
TGGGCTGCGT GGGATTGCTG CGGTGGCTCT ACGCCAAGCC TGGTGGAAGA TGCCGACAAG
GGCGCCGTAT ATCGCTTTGT GGTAGGCGAC AGCCCAACAG TCAACGGCTT TATCAGCCGC
GCGGCCTTTA TTACCGATCC GGCTGGCGTG CCCAGTCCTT TTGATGCAGC GCCCATTGAG
GCAAGCGGCG TATTAAGCTT TGCCATGAAG GTGGTGAGTG CCCCGTCAAA TGCAGACTCG
ACCTGGATGA TGAAGGTCGA AAGCAACGAA GGTGCGACCG CCGTTGAACT GCCGCTCACC
GCAAGCAGTG AAGGTGTGGC ACCGGCAGTG GGCCAGTGGC AAACCTTCAG CTTCCCGCTG
TCTGAACTTG CTGCCAAGGG CCTGGACTTG TCTGCCATTG ATGTGGTGAT GGTGTTCCCC
GCTTGGGGCA CCGGCAGCGG CGCCGAGTAT CTGTTGGATG AAGTGAAGAT TGCTCGTCCC
GATACCAGTT TGCCGTCACT GACCATCTTT ACCGACAACG AGAACCCCGA TTGGCCGATG
TGGGACTGCT GTGGTGGCTC GACCCCGCAA GTGGTATCCG ATGATGCAGA GCACGGCATA
GTGTCCGAGT TCAGCATTGG TGCCAGCCCG ACGGTGATGG GTTATATCAA TCGCACCGAG
CTGGGTGGCG GTGGCAATCC CTTCGATGCC TCATCCCTGT ATGACAATGG CGTAGTGCAA
TTTGACCTTA AGGTCGTCAC CGCGCCCAAT ACCGTCGATG CGCCCTGGCT GTTCAAGGTG
GAATCCAACA ATGCGGCTTC TGCGGTGGAA CTGCCGTTGA CCAGCAGCGT TGAAGGCATG
GCGCCATCCG CGCAGTGGCA AACCTTCAGC TTCCGCCTGT CGACCCTGGC CGATGCGGGA
TTGGATTTAA GCGCCATCGA TGTGTTGATG GTATTCCCTG CCTGGGGACA GGGTGAAGGC
GCTGTCTATC GCATTGATAA CGTTAAAATC CATCAACCCG GATCCGGCGG CTCCATGAAT
GCCCTGAGTC TGTTTGCCGA CACAGTGGCC GATGCCTGGT CAATTTGGGA TTGCTGCGGC
GGCTCAACCC CTACGGTTGA GGCCGATGAT GCTGCCCATG GCGCCGTGGC TGAGTATGTG
ATTGGCGCCC AGCCAACTGT GGTGGGCTTC TTCGCCGATG ATGGTGTCTA TTACGATGCA
TCCGCTGCTG TAGAGACCGG CGTAGTGCGG TTTGAAATGA AGCTGGTTTC TGCACCAAAT
GACCCCGGCT CGGTCTGGAA GTTCAAGATT GAATCCGGTG ATGCCAGTAC TGCCGTTGAG
CTTAACCTGA CCGACAGTGT CGAAGGCAGT GCACCTGTTG TAGGCCAGTG GCAGACCTAT
ACTTTCCCGC TTAAGACCTT GACTGACATG GGGCTGGATG CCAGCGCCAT TGATGTGGTG
ATGGTATTCC CTGCGTGGGG TACCGGTGAG GGGGCGGTGT TCCGTTTGGA TAACGCACTG
ATAGGCACGC CCTGA
|
|---|
| Protein sequence | MMMKNSGTSK YLSLGLLAAA LQGCGGDTNT STDLGSVNLE GPATGWELVW SDEFDGSSID
AAKWAHDVDC AGGGNQESQC YTADEANSFV ADGMLNIVAL KAPEGAEKPY TSARLTTKGK
ADFTYGRFEM RAKLPSGQGS WPAFWMLPTD NVYGIWPRSG EIDIVEAVNL KAATVEGTPE
AYVHGTLHYG REWPKNEQSG KAYLLPNGVN PADDFHTYAI EWQQGEIRWY VDDYLYATQR
RSELRYNSKG QAVGLAHKGW FTEYYDQSSG DLQLSWTDAP FDEKFHLIVN FAVGGNWPAS
VNETGIDDTA FNENNRYQID FVRVYECAAN PDTGKGCETV RPGYDNPDDA LVEGKAPVPV
PPSDGTPKDL LIFDSTPNPN WAAWDCCGGS TPSLVEDADK GAVYRFVVGD SPTVNGFISR
AAFITDPAGV PSPFDAAPIE ASGVLSFAMK VVSAPSNADS TWMMKVESNE GATAVELPLT
ASSEGVAPAV GQWQTFSFPL SELAAKGLDL SAIDVVMVFP AWGTGSGAEY LLDEVKIARP
DTSLPSLTIF TDNENPDWPM WDCCGGSTPQ VVSDDAEHGI VSEFSIGASP TVMGYINRTE
LGGGGNPFDA SSLYDNGVVQ FDLKVVTAPN TVDAPWLFKV ESNNAASAVE LPLTSSVEGM
APSAQWQTFS FRLSTLADAG LDLSAIDVLM VFPAWGQGEG AVYRIDNVKI HQPGSGGSMN
ALSLFADTVA DAWSIWDCCG GSTPTVEADD AAHGAVAEYV IGAQPTVVGF FADDGVYYDA
SAAVETGVVR FEMKLVSAPN DPGSVWKFKI ESGDASTAVE LNLTDSVEGS APVVGQWQTY
TFPLKTLTDM GLDASAIDVV MVFPAWGTGE GAVFRLDNAL IGTP
|
|---|
| |