Gene Sama_1332 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_1332 
Symbol 
ID4603584 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp1623415 
End bp1624650 
Gene Length1236 bp 
Protein Length411 aa 
Translation table11 
GC content57% 
IMG OID639780682 
Productlipoprotein releasing system transmembrane protein LolE 
Protein accessionYP_927209 
Protein GI119774469 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG4591] ABC-type transport system, involved in lipoprotein release, permease component 
TIGRFAM ID[TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.803281 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTTTCTT CCTCTGCCTT TCTTATCGGA TATCGCTACT GGCGGGCCCG CAAAGCCAAT 
GCCTTTGCCT CCTTTATTAC CCTGTTTGCC GTGAGTGGTA TTTTCCTCGG AGTTGCCGCC
CTGATTGTGG TCAGCTCAGT GATGAATGGC CTGGAAGGGC AACTCAAAAC GCGCATTCTT
GGCGCCGTGC CCCAGGTGGT TGTTGAAAAA AACGATGGCT TCGCCGACTG GCGTCAAACG
GCCGACCAGC TGCAAGCAAC GTTGCCGGGC ATTGTGGGCG TAAGCCCATC CACAGGGACC
CAGGCCATGT TGCAATCGAG CAGCAACATC GGTGCCGTGC AGCTTTCCGG TATTCTGCCT
GAGGTGGAGT CAGCCCTGGC GAGCCGAACT ACCACTGTCT ACTCTCCCGC CTTCGACAGC
CTTATCAGCG GCGAATACCG GATAATCCTT GGGGTACAGC TCGCGTCAGA GCTGGATGTG
GCCGTGGGGG ACACCATCCG GGTGCTCAGC GGCGAAGGCG TGGTGTTTTC ACCTTTGGGG
CCCGTACCCA GCCAGCGTAA GTTTATCGTA TCGGGGCTCT TTCAGATGGG GTCTCAGGTG
GATGCCCAAC TTGCTTTTAT TCATTATGAC GATGCCCGCC GTCTGATGCG AAAAGCACCG
GACAAGGTGG ATGGCCTCAG ATTGTATCTG GACGATCCCT TTGAGGCCGA AGCCACAGGC
AAGGCTGTGC CGCAGATATT GGCAGCTGAG GGCGATACGC TCAATGTTCA TGACTGGCGC
GACGGCTACG GCCACCTGTT TGGTGCAGTC AAAATGGAAA AGAATATGAC GTCGCTGATG
CTCAGCCTGA TAGTGGCGGT GGCAGCGTTT AACATAGTAT CGGCGCTGGT GATGATGGTG
GTGGATAAAA CCACCGATGT GGCCGTACTG ATGACCCAGG GACTGACCCG CAGTGCCGTG
ATGGGGATTT TTGTGACCCA GGGTTCCCTG AATGCCTTAC TGGGACTGGT GCTTGGGCTG
ATTGCCGGTT TAGTACTGAC GCTGAACCTG AATCCGCTGC TCAGCGCTCT GGGGATTGCT
GTGCTGGGCG CAGGGCAGCC TCTGCCGGTG ATAATCGCTG CCGAGCAGCT CTGGCTGATA
GTGATTGGCA CTGTGGCCAT AACTTTGCTG GCGACTCTGT ACCCGGCACT CAGGGCGTCC
CGGGTGGAAC CCGCTTCGGC GCTCAGATAC GAATAA
 
Protein sequence
MFSSSAFLIG YRYWRARKAN AFASFITLFA VSGIFLGVAA LIVVSSVMNG LEGQLKTRIL 
GAVPQVVVEK NDGFADWRQT ADQLQATLPG IVGVSPSTGT QAMLQSSSNI GAVQLSGILP
EVESALASRT TTVYSPAFDS LISGEYRIIL GVQLASELDV AVGDTIRVLS GEGVVFSPLG
PVPSQRKFIV SGLFQMGSQV DAQLAFIHYD DARRLMRKAP DKVDGLRLYL DDPFEAEATG
KAVPQILAAE GDTLNVHDWR DGYGHLFGAV KMEKNMTSLM LSLIVAVAAF NIVSALVMMV
VDKTTDVAVL MTQGLTRSAV MGIFVTQGSL NALLGLVLGL IAGLVLTLNL NPLLSALGIA
VLGAGQPLPV IIAAEQLWLI VIGTVAITLL ATLYPALRAS RVEPASALRY E