| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1325 |
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| Symbol | |
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| ID | 4603577 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 1613908 |
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| End bp | 1615284 |
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| Gene Length | 1377 bp |
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| Protein Length | 458 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639780675 |
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| Product | L-serine ammonia-lyase |
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| Protein accession | YP_927202 |
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| Protein GI | 119774462 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1760] L-serine deaminase |
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| TIGRFAM ID | [TIGR00720] L-serine dehydratase, iron-sulfur-dependent, single chain form |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.138393 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCAGTG TATTTGACAT ATTTAAAATT GGAATAGGTC CTTCCAGTTC TCATACGGTC
GGCCCCATGA AGGCTGGCAA AGAATTCGTT GCCCGTGTGG AAAGCATGGG GTTGCTGGCA
CAGGTTGATG AACTGCGTGC CGAGCTGTTT GGCTCATTGG GCCAAACAGG TAAAGGCCAC
GGTACCGGCA AAGCCGTGAT CCTGGGCCTC ATGGGGGAAG ATCCTGAAAC CGTTGATACC
GACGCTATCG ATGGCATTCT GGCCCAGGTG TCGAGTCAGG AAACCCTGAC GCTGGCACAG
GGTAAAACCG TTAAGTTTAC CCGTGAAGAC GGCATCATCT ACCACAGACG CAAGACGCTT
CCCGCCCATG CCAACGCCAT GACCCTCTAT GCCTTTGCCG GTGGTGAGTG CCTGTATCAG
CGTACCTACT ACTCGGTAGG CGGTGGCTTT GTGCTGGATG AAGATCAAAT CGAGCGTAAA
AATCCGTCAC CCGCCACGCC CATCAAGGCA GCACCTTATG ATTTCAACAG TGCCCAACAG
CTACTGGAAA TGTGCACTGA CAATGGCTTG TCGATTTCAT CCCTGATGAT GCAAAACGAG
CTGACGCTGG CCAGCGAAGA CGACGTCAAG GCGCGTTTGT GGCATATCTG GCAGACCATG
AAAACCTGCA TTGAGAAAGG CTACAAGAAA GAAGGCATGC TCCCGGGAGG GCTTAAGCTG
CGCCGTCGTG CTCCTGGCCT TTATCGTCGC CTGCAAGCCG AAGGCCGCAA CAACGTGGAC
CCGCTGAATG CCATGGACTG GGTAGACCTG TTTGCATTAT CGGTGAACGA GCAAAATGCG
GCCGGCGACC GTGTGGTAAC GGCCCCCACC AATGGTGCTG CGGGTATTAT CCCGGCGGTA
CTCTGCTATT TTGATACCTT TGTGCAGCAA GTCGATGTGG ATATTTGCGC ACGTTATCTC
CTGACTGCCG CTGCCATTGG CATTCTGTAC AAGAAAAACG CCTCTATTTC TGGCGCTGAA
GTGGGCTGTC AGGGCGAGGT GGGCGTTGCC TGCTCCATGG CTGCTGCAGC ACTCACCGAA
ATCATGGGTG GCACGGTTGA GCATGTTGAA AATGCCGCCG AGATTGGTAT GGAGCATAAC
CTGGGCCTCA CCTGTGACCC GGTAGGTGGC TTGGTACAGG TTCCCTGCAT TGAGCGTAAC
GCCATGGGGG CAGTCAAGGC CATCAATGCC TCGCGTCTGG CACTTCGTGG CGATGGCAAC
CATAAGGTGT CTCTGGACAA GGTAATTAAA ACCATGATGG ACACCGGCCG GGATATGCGC
AGTAAATACA AGGAAACCGC CAAGGGTGGT CTGGCTGTTA ACATAGTTGA GTGTTAA
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| Protein sequence | MISVFDIFKI GIGPSSSHTV GPMKAGKEFV ARVESMGLLA QVDELRAELF GSLGQTGKGH
GTGKAVILGL MGEDPETVDT DAIDGILAQV SSQETLTLAQ GKTVKFTRED GIIYHRRKTL
PAHANAMTLY AFAGGECLYQ RTYYSVGGGF VLDEDQIERK NPSPATPIKA APYDFNSAQQ
LLEMCTDNGL SISSLMMQNE LTLASEDDVK ARLWHIWQTM KTCIEKGYKK EGMLPGGLKL
RRRAPGLYRR LQAEGRNNVD PLNAMDWVDL FALSVNEQNA AGDRVVTAPT NGAAGIIPAV
LCYFDTFVQQ VDVDICARYL LTAAAIGILY KKNASISGAE VGCQGEVGVA CSMAAAALTE
IMGGTVEHVE NAAEIGMEHN LGLTCDPVGG LVQVPCIERN AMGAVKAINA SRLALRGDGN
HKVSLDKVIK TMMDTGRDMR SKYKETAKGG LAVNIVEC
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