| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1271 |
|---|
| Symbol | |
|---|
| ID | 4603523 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 1559653 |
|---|
| End bp | 1560150 |
|---|
| Gene Length | 498 bp |
|---|
| Protein Length | 165 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 639780621 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_927148 |
|---|
| Protein GI | 119774408 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1451] Predicted metal-dependent hydrolase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.0012956 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGAGCCAAT ACCTGGCCCA TTACCCCGAG CAGGTGCGCA CTCAGGTGGC CGCCCTGCTC
GAGGCTGGCA CCCTGGGCAA TGTGCTCGCC CGTCGCTACC AGGCGCAGCA CGATATCCGC
TCCGACAAGG CGCTGTTTGA CTACACCATG GCGCTGAAAA ATCGTTACCT CAAGCGCAGC
GAACCCCTTT CCAAGGTGTG CTTTGACGAT AAAATCAGTT TGCGTCAGCA GGCTCTCGGG
CTGCATACCG CCATTTCCAG GGTTCAGGGT AATAAGCTCA AGGCCAAACG CGAAATTCGC
ATCGCCTCTA TGCTCAAGCA GGTGCCAGAG CCCTTGCTGC GTATGGTGGT GGTACACGAA
TTGGCACATT TAAAAGAACG TGACCACAAC AAAGCCTTTT ATCAGCTGTG CTGTCATATG
GAAGGCGACT ACCATCAGTT GGAATTCGAT TTACGATTAT TGCTGACAGC GATAGACGCG
GGTCAGTCGC CCTTTTAA
|
|---|
| Protein sequence | MSQYLAHYPE QVRTQVAALL EAGTLGNVLA RRYQAQHDIR SDKALFDYTM ALKNRYLKRS
EPLSKVCFDD KISLRQQALG LHTAISRVQG NKLKAKREIR IASMLKQVPE PLLRMVVVHE
LAHLKERDHN KAFYQLCCHM EGDYHQLEFD LRLLLTAIDA GQSPF
|
|---|
| |