| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1253 |
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| Symbol | |
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| ID | 4603505 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1540648 |
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| End bp | 1542429 |
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| Gene Length | 1782 bp |
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| Protein Length | 593 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 639780603 |
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| Product | hypothetical protein |
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| Protein accession | YP_927130 |
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| Protein GI | 119774390 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.177752 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.0000127054 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGAATACGC AACAGGTGTT TATCTCTGGA GTGCAACTCT TTCAGGCTGG AAATTTCGCT
GGGGCTAGCC AGTGTTTTTC AACGGTCGTG CAGCAGATCC CGCACCATTT GGATGCGCAC
TTCCTATTGG CGCAGTGTCG CCGAAAGCTG AACGACCCGG ACGGGGCCGA AAAAATACTT
CGCTGGTTAT TATCGGTAAG AAGAACTCCC GAGTATCTGA TAATGTTGGC GAATATAAAC
ATTGCCAAAC AGGCTTGGAT AGAGGCTGAA ACACAACTGC GCGATGCGAT TGAGCTGAAA
CCTTCATTTG ATGCCTGGGT GAATCTCGGT AGACTTTACT TCGTATTGGA AAACTGGTCG
CAAGCAAAAG TTGCTTTGCA GCGATCCCTT AAACTTCGCC CGAATGATGT GGGCTCGCTC
ATTTCGCTGA TAGAGTGCTA TCGAAGATTG GGGGAGGTTG AACAAGCCAT TTCCGAGTTG
AAGCTCCTGG TTCATAATGC CGACCTTAAT CTTAGCCAAC TCCATAAAAT CGCTTTTTTG
CTGCATTCCT TGGATCACAG TCAAGAGGCA TTCGATCTGC TGCGATTCAG AATTCCTGTT
GAGGGATTTA ATGAAGGTTT GATGGGACTG CTGGCTAAAC TTGTGCTGCA ACACGAAAGC
ATTGACGGCG CTAAAGAGTT TATCACCGGC ATGCTGAGCG TCCCATCCAT TAAGCGAAGA
GCCCTTGATT TACTCTTTAG ACTTGAATGG GAAAGCGGGA AGGATTCTGC CTTTATCCAT
TATGAATCAG TACTTAAAAG TACTCCTTCA GAAGATGTTC TTGAAGACTA CCTAAGAAAG
CTCATTAAAT GTGGCCGCTT TGAGTTTGCC TATCAACAAC TGAACGGTCT AAATGAAGGG
CAACCCAATA ACCCCGTCCT TAAATTTCTT AAAGCGTTTA TTGTCTGCGA GCTGGGGCAT
TTTGATGAGG CCCTGACTGA AATTAATGCG CTTATCGCAC AATCCCCGGA AGACGGACAA
TTCATTGAAC AGAAGGTTAA GACACTGCTC TCAATGAAAC GGGCTGAGGA GGCTTTTGAA
CTGATGCAGC TCCGGTTAAA GCTACCGGAT GTTAAACAGG GGACGTATGC GCTCTATGCC
AGCGTTTTGA AATTGAGTGG TAGGGAACAG GAATATAGAC GACTTTACGA TTTCGATAAG
CATATCAACT GTATTCAGAT TGATCTGACA TCAAACAACC TGCATGAACG GCTCAAGCAA
AAGCTCACAG GAATGCATAG TGGCAATCGA GAGCCCTTCG AACAATCTCT GCGTGGAGGA
AGTCAGACCA CTGGTCATTT GTTCGAAAGC GGTGACCCGG ATATTGCAGA GCTCAAGGAA
AGATTGATGA AGCAGTTGGC GGAGCTGTTC TCGCGTGTAG ACTTCAGTTC ATCTGCTCCG
TTGAACTCGT TGAATGTGGG TGAATTCACT ATCACTGACT CCTGGTCAGT CCTGCTCAAA
GACACGCACT TTCACGCCAA TCATTTTCAT AATGCCGGTG ATCTCAGTGC TTGCCTATAT
TTGGATGTGT CCGGGGTGAA CAGCCATCCG GGCGAAGGAT GGATAAAATT TGGGGAGGCG
GAACTGGGAG GTTGGGTGCA GGATTGTCCC GACTACTGTG TTAAGCCTGA CACCGGGCTT
TTGGTCGTAT TTCCCTCTTA TATGTGGCAC GGAACTACAC CATTCCTGAG TGACAAACAG
CGGATGACTA TCGCCTTTGA TCTGCGCTTT TTAAGAGACT GA
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| Protein sequence | MNTQQVFISG VQLFQAGNFA GASQCFSTVV QQIPHHLDAH FLLAQCRRKL NDPDGAEKIL
RWLLSVRRTP EYLIMLANIN IAKQAWIEAE TQLRDAIELK PSFDAWVNLG RLYFVLENWS
QAKVALQRSL KLRPNDVGSL ISLIECYRRL GEVEQAISEL KLLVHNADLN LSQLHKIAFL
LHSLDHSQEA FDLLRFRIPV EGFNEGLMGL LAKLVLQHES IDGAKEFITG MLSVPSIKRR
ALDLLFRLEW ESGKDSAFIH YESVLKSTPS EDVLEDYLRK LIKCGRFEFA YQQLNGLNEG
QPNNPVLKFL KAFIVCELGH FDEALTEINA LIAQSPEDGQ FIEQKVKTLL SMKRAEEAFE
LMQLRLKLPD VKQGTYALYA SVLKLSGREQ EYRRLYDFDK HINCIQIDLT SNNLHERLKQ
KLTGMHSGNR EPFEQSLRGG SQTTGHLFES GDPDIAELKE RLMKQLAELF SRVDFSSSAP
LNSLNVGEFT ITDSWSVLLK DTHFHANHFH NAGDLSACLY LDVSGVNSHP GEGWIKFGEA
ELGGWVQDCP DYCVKPDTGL LVVFPSYMWH GTTPFLSDKQ RMTIAFDLRF LRD
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