| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1252 |
|---|
| Symbol | |
|---|
| ID | 4603504 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 1537855 |
|---|
| End bp | 1540578 |
|---|
| Gene Length | 2724 bp |
|---|
| Protein Length | 907 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 639780602 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_927129 |
|---|
| Protein GI | 119774389 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.000104446 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.0000165135 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | ATGCTTAAGA ACAGCATGCT GGCAAAATCT GTGCGTTTTG CCTTAGTAGC AGGTGCGACG
ACTGCAGCGT TTACCGCGCC AACTGTATAT GCAGCTGACG AGGGCGAAAA AGTCGAGCGT
ATCGAAGTAA CTGGCTCTCG TATCAAGCGT ACTGACCTTG AAACTGCCAG CCCGATCACC
ATGTTTTCTG CTGAAGACAT CGCGAACTCA GGTGTAGCTA CCCTCGAAGA CTTCGTACAA
AACATTCCTG CCATCAACGG TGGCGCCGAA GGTTCTTCTG TAAACAACGG TAGCCGCGGC
TTTGCGACTG CTTCTCTGCG TGGTCTGGGT TCAGGCCGTA CTCTGGTTCT GATCAACGGT
CGTCGTTTCG CTTCTGGCGA TTTGAACTCT ATTCCTACTG CTTACGTTGA GCGTATCGAA
GTTCTGCGTG ACGGTGCTTC CACCGTTTAC GGTTCTGACG CTATCGCCGG TGTAATCAAC
TTCATCACCA AGAAAGATTT TGAAGGTATT GAGTTCGGTG CTCAGTACGA TATCGCCAGT
GAAGGCGACG GTGAGAAGAC TCTGCTGTCT GTGACCACTG GTACTTCCAG CGATCGCGGC
AACGTGGTTA TGTCTCTGCA ATACACCAAG CGTGAAGCGA TTTGGCAGGG CGATCGTGAT
TTCTCTGCTT GCCCAATATT TGAACGTGGT GGTGAGAAAG TTTGTGGTGG TTCAGGTACC
ATCCCTTACG GTCAATTCTT CTATACTGGC GCTAACAGCC CAGCCGGCGG TCACGTAATT
GACCCATCAA CTGGTGCAAT TCGTAAGTTT GACCAAGCGG TTGATGGTTA CAACTATGCC
GTTGCCAGCT ACATGGTGAC CCCTCAGGAA GTGTTCAGCA TCAACGGTGC TGGCCGCTAC
GAAATCAGCG ATACCCTGAC CGGTTTCATG GAAGGTGGTT TCACCAACCG TCAGTCTGAC
CAGTTGATGG CACCAGAAGG TACCTTCTGG GGACCAACCA TGCCAGCCTC AAACCCATAC
AACCCAACCG GTGAAGACCT GATTGTGGTG CGTCGTCTGG CAGAGACCGG CGGTCGTGGT
TTTACTCAGG ACTTCTCCGA CTACCGCATG GTATTTGGTC TGGAAGGTTC TCTGGGCGAT
TACTACTGGG ATCTGTCATA CAACTTCGCA CGTTATGTTG ACTCACGCCT GGACTTGGGC
CGTGTAAACC CGACTCGTGC CGAAACCCTG CTTGACCCGG ATCTGTGTGC TAAAGATTCA
GATTGCCCAG GTATCTGGAA CCCACTGGCC GAAGGTACTC TGACGCCAGA AATGCTGGCT
TACGCCTTCG TACCTAACTC GCCAGTGGTT CGCGGTGAGA CCCGTCAGCT GCAGGGTAAC
ATCTCCGGTA GCCTGTTCGG TCTGGAACTG CCAGGTGGTG AAGTCATGTT CGCTGCCGGT
TTTGAGAAGC GTTGGGATGA ATACCAGAGC GTACCAGATG GTGCGGCTTC TATCGGCCAG
ATCTACTCTG TAGCTGGTGA GCCAACTTCC GGTGACTACT CTGTAAACGA AGCTTACGCT
GAATTCGATA TGCCAGTCCT CGAAGGCCTG CCATTCGCCG AGTCTGTACG CGTAACTGCT
GCCGTACGTT ACTCTGACTT CGACTTCCTG GATGATGGTT CTACCAACAC CAAGTTCGGT
CTGGAGTGGG TACCATTCGA CGGTCTGATG CTGCGTTCTA CTCTGGCTGA CGGTTTCCGT
GCACCAAGCG TGAGCGAACT GTATGCTCCT CAGTCTGAAA CCAACCTGGC CTACGCAGAG
CCTTGTAAGA ACTACGCTAC CGGTACTCAG AACGCGACCG TTAAAGCCAA CTGTGCTGCC
GAAGGTCTGC CAGGAAACTT TGAACTGTCT TCTAACCAGT CTTCTACTGT AGTGGGTGGT
AACCCAGATC TGCAGCCAGA AGAGTCTGAA AGCTTTACTG CCGGTTTCGT ATACAGCCAC
GACATCGGTT TCAGCGCCAG TGTTGATTAC TTCAACATCG AAATCACCAA CGGTATCGGT
ACTGCCGGTA CTGACAACGT GGTTAGCGCT TGCTGGAACT CAGCCAACTT CTCAAGCCCA
CTGTGTGACC TGATCAAAGG CCCAAGCTTG ACTGGTGATG CTCCACACCC AACTTCTCCA
TACCGTACTG CGCTCGGTCC AGTTGCAGGT ATCCTGCTGA CCAACGCCAA CCTGTCTACC
TTCGAGACTT CAGGTTATGA CTTTGACCTG TCTTACAAGA CTGACATCGG TGAAGGCCAG
TTCTCTGCAC TGCTGAACGG TACTTACCTG GAGCAGTATG ACTACCTGCC ATACGAGGGT
GCTGACATCG TTTCTGCCGC CGGTAAAGTG GCTGCTGACC AGTGGGAAAC CACCCTGGCT
GTGTTCCCAA GACTGCGTGC CAACCTGTCT TTGAACTACA CCATGGATAA CTGGTCTGTA
AGCTGGCAGA CCCGCTACCA GTCTGAAGGT GAAGACTACT TCGCCAGCGA AGACAACCTG
GACAACATTG CTGATTCCAT CTGGTATCAC GATGTACAGG GTACTTACTT CGCTATGGAC
AACCTGTCTC TGACTGTGGG TGTGCGTAAC CTGTTCGATG AAGAAGCTCC ATACATCTCC
AACAACCAGG ATATGAACAC CATCCCAGTG TCTTACGACA CTGCCGGTCA GTACTGGTAC
GCTCGCGTAA ATGTTAAGTT CTAA
|
|---|
| Protein sequence | MLKNSMLAKS VRFALVAGAT TAAFTAPTVY AADEGEKVER IEVTGSRIKR TDLETASPIT
MFSAEDIANS GVATLEDFVQ NIPAINGGAE GSSVNNGSRG FATASLRGLG SGRTLVLING
RRFASGDLNS IPTAYVERIE VLRDGASTVY GSDAIAGVIN FITKKDFEGI EFGAQYDIAS
EGDGEKTLLS VTTGTSSDRG NVVMSLQYTK REAIWQGDRD FSACPIFERG GEKVCGGSGT
IPYGQFFYTG ANSPAGGHVI DPSTGAIRKF DQAVDGYNYA VASYMVTPQE VFSINGAGRY
EISDTLTGFM EGGFTNRQSD QLMAPEGTFW GPTMPASNPY NPTGEDLIVV RRLAETGGRG
FTQDFSDYRM VFGLEGSLGD YYWDLSYNFA RYVDSRLDLG RVNPTRAETL LDPDLCAKDS
DCPGIWNPLA EGTLTPEMLA YAFVPNSPVV RGETRQLQGN ISGSLFGLEL PGGEVMFAAG
FEKRWDEYQS VPDGAASIGQ IYSVAGEPTS GDYSVNEAYA EFDMPVLEGL PFAESVRVTA
AVRYSDFDFL DDGSTNTKFG LEWVPFDGLM LRSTLADGFR APSVSELYAP QSETNLAYAE
PCKNYATGTQ NATVKANCAA EGLPGNFELS SNQSSTVVGG NPDLQPEESE SFTAGFVYSH
DIGFSASVDY FNIEITNGIG TAGTDNVVSA CWNSANFSSP LCDLIKGPSL TGDAPHPTSP
YRTALGPVAG ILLTNANLST FETSGYDFDL SYKTDIGEGQ FSALLNGTYL EQYDYLPYEG
ADIVSAAGKV AADQWETTLA VFPRLRANLS LNYTMDNWSV SWQTRYQSEG EDYFASEDNL
DNIADSIWYH DVQGTYFAMD NLSLTVGVRN LFDEEAPYIS NNQDMNTIPV SYDTAGQYWY
ARVNVKF
|
|---|
| |