| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1228 |
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| Symbol | |
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| ID | 4603480 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1511561 |
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| End bp | 1513408 |
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| Gene Length | 1848 bp |
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| Protein Length | 615 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639780578 |
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| Product | peptidyl-prolyl cis-trans isomerase D |
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| Protein accession | YP_927105 |
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| Protein GI | 119774365 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0760] Parvulin-like peptidyl-prolyl isomerase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.484685 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTAGAAA AGATCCGTGA AGGTGCCCAG GGTACCATTG CCAAGAGCAT TCTGGTGCTG
GTCATACTTT CTTTTGCCTT TACCGGTGTG AGCAGTTATC TCGGCTCATC CACCGAACCT
GCGGCTGCCA CAGTGAATGG AGAAGAAATT CCCGTCTCAG CACTGGAGCA AGCCTTCCAA
AATGAAAAGG CACGTATGGA GCAGCAACTG GGTGAGATGT TCCAGACCCT GGCCGCCGAC
GACAACTACC TGCGCTCCAT CAGACAGGGT GTGCTCGAGC GTATGATTGC TGACAAATTG
CTGGATCAAA CTGCCAGTGA AATGGGTCTG CGCATCTCCG ATGAGCAAAT CAAGCAAGCA
ATTATGGAAG AGCCCGCATT CCAAACAGAA GGCAAGTTTG ATAACGAACG TTACCTGGCT
ATCCTGCGTC AGCTCGGATA CCAAACCAAC AGCTTCCGTG ACATGATGCG TGTCGACATG
ACCCGTCGTC AGCTGGTGAA CGCCCTGATT GGCAGTGAGT TTGTGCTGCC GTCTGAGAGC
AAGGCGGTTG CTGAGCTGCA AGGCCAGACA CGTGACCTGC GCTATCTGGT GGTTGAGTCT
CAGCCCTTCG AAGCGGGTAT CACAGTGGCT GACGATGAAG CCAAGAGCTT CTACGATGCC
AATCCTGATC AGTTTATTAA ACCTGAGCAG GTAAGCCTCG AATACCTGAC GCTTTCTGCC
AAGTCCCTTG CCGATGAGGT GAGTGTGACC GACGAGCAGG CCAAAGCCTA CTACGACGAG
CACATGAGCC AGTACAAGAC GCCTGAAAAA CGTTTGGCTG CCCATATCCT GGTGAATCTG
GGCGACGACG AAGCCGCCGC AAAAACCAAA GCCGATGCGA TTTATGCCAA GCTTCAGGCC
GGTGCAGACT TTGCCGAGCT TGCCAAAACC GACTCTGAAG ACACTTTCAG CGGTGAGCTG
GGTGGTCAGC TGGACTGGTT TGAGCAGGGT GTAATGGATC CTGCGTTTGA CGAAGCCTTG
TTTGGTCTCG AAAAAGATCA GTATTCTGCT GTGGTGAAAA CCGACTATGG TTTCCACATT
ATCAAGCTGC TTGATGTTCA GGGCGGTGCC CAGGCCAGCT TTGACGAAGT GAAGGATCGT
ATTTTCGCTC AGATCAAAGA AAAAGATGCG CTGGATAAGT TCTACAGTCT GCAGCAAAAA
CTGGCCGATA CCAGTTACGA AGTCCCAGAT AGCCTGACCG AAGCGGCCAA AGCCACCGGG
CTTGAAGTAA AATCCACAGG TCTTTTCGCC CGAGAAATGC CTCCGGCTGA AATCAGCAAC
CCAGCACTCA TCAAAGCAGC CTTCTCTGAG CAGGTATTGC TGAGCGGCAT GAACAGCGAC
GTGGTTGACC TTGGCGACAA CCAGGTTGCC GTGGTGCGCG TTAAAGAGCA CAAGCAAGCC
GGTACTTTGC CATTCGATGA AGTGAAAGCC GGCATTGTTG CCCGCTTGAC CCAAGACAAG
GCCAACGATG CAGCCAAACT GCAGGCGCAG GAACTGCTGG CCAAGTTCAA GGCCGGTGAA
GCACTGGAGC TGACGGCCAA AGCCAAGGTT GCCCGTTTCG ACCGTGAGTT GGATCCCTCC
ATCGTGAATA AGGGCTTCCA ATTGGCCGTA GGCGGCGCTG ATACCATCAG CATGGCTTCC
GGTTATGCGC TGGTAGTATT GGATAAGGTT AATCCAGCTG AGGGCGTTGA AGACGCTCTG
GTGCAGGCCC TCGCTCAGCG TCTGAGCAAT CAGTATACAG AGCTTGCCTA TCGCGGTGTT
ATCGACTCGC TGAAGGCGAA AGCCGAAATC AGTTACGCTG CCGAATAA
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| Protein sequence | MLEKIREGAQ GTIAKSILVL VILSFAFTGV SSYLGSSTEP AAATVNGEEI PVSALEQAFQ
NEKARMEQQL GEMFQTLAAD DNYLRSIRQG VLERMIADKL LDQTASEMGL RISDEQIKQA
IMEEPAFQTE GKFDNERYLA ILRQLGYQTN SFRDMMRVDM TRRQLVNALI GSEFVLPSES
KAVAELQGQT RDLRYLVVES QPFEAGITVA DDEAKSFYDA NPDQFIKPEQ VSLEYLTLSA
KSLADEVSVT DEQAKAYYDE HMSQYKTPEK RLAAHILVNL GDDEAAAKTK ADAIYAKLQA
GADFAELAKT DSEDTFSGEL GGQLDWFEQG VMDPAFDEAL FGLEKDQYSA VVKTDYGFHI
IKLLDVQGGA QASFDEVKDR IFAQIKEKDA LDKFYSLQQK LADTSYEVPD SLTEAAKATG
LEVKSTGLFA REMPPAEISN PALIKAAFSE QVLLSGMNSD VVDLGDNQVA VVRVKEHKQA
GTLPFDEVKA GIVARLTQDK ANDAAKLQAQ ELLAKFKAGE ALELTAKAKV ARFDRELDPS
IVNKGFQLAV GGADTISMAS GYALVVLDKV NPAEGVEDAL VQALAQRLSN QYTELAYRGV
IDSLKAKAEI SYAAE
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