Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_1210 |
Symbol | |
ID | 4603462 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 1486776 |
End bp | 1488959 |
Gene Length | 2184 bp |
Protein Length | 727 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 639780557 |
Product | decaheme cytochrome c |
Protein accession | YP_927087 |
Protein GI | 119774347 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR03507] decaheme c-type cytochrome, OmcA/MtrC family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.260087 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAACTTCC AAAGACAGGT GTACAGGACT ACCCGCCTGG CGTTGGCCGC CCTGATATCG CTGACACTAT TTGCCTGTGG CAGCGACGGT GAGGACGGTA AAGATGGCGA GGACGGCGTT GTTGGCGTCA ATATTGATTC TACTGCCACG CTTAAGGTGA ACTTCACCGA TGCCAGGGTC GAAGATGGCA AAGTCACTGC CGACTTTATA CTGACCAATG CCAATGGCGT TGCTGTGCTT GGGTTAACCA AGGCGCACGA CCTCCGATTT GGCATCGCCC AGTTAACCCA GGTTACCCAA ACCATAGGTA CGGGAGACGA GGCCAGAGAA GCCGACCTGG GTTATCAGTG GCAGGCCTAT ATCAACAGTC TTCGCCAGCC AGGCACAGTG CCGGAAGGTG TGGATGGCCT TAACCCGTCC CCCCAATATC AGGCGGGCGT GGAAGCCGCC AACGGTTGTG ATACCTGCTT GGTTGACCAT GGCGACGGCA GCTACAGCTA CAGTTTTCAG GTGAACATCG CCCAGGTCAC AGAACCACTG GCGGTAGTTT ACAATGCGGA TGCCACCCAA AGGATCACCA TGGAGCTGAA GCTGCCTCAG GTGGTTGCAA ACGGTCATTT CGATTGGCAG CCCTCCAGCG GCAACACCGA AGGCATTCAA ACCCGAAATG TGGTCACCAT CAAGGCCTGT TATACCTGTC ACCAACCGGA AAGCCTGGAG TTACACGGTG GACGCAGGCT GGATCTGGAA AACTGTGTTG CTTGCCATAC GGCAACCTCC GGCGATCCTG AATCGGGCAA CAGTGTCGAA TTCACCTACC TTATTCACGC CATCCACCGT GGTGCAGAAC GTCATACCTT TGATGCCGAT GGCAATCAGG TAGACGACCC GTACAAGATT GTGGGATTCG GCGGCAGTGT GCATGACTAT GGTTTGGTGC ACTTCCCGAG AAAACCGGCG TCCGACTGCA GTGTGTGTCA CCAGGAAGGC ACAGGTGCAC CCGCAGACGC CGCGCTCTTC AAAGCCGAAA AGAGCAACAC CGCCTGCGTG GCCTGCCACT CGGAAAAGCC CTCCTCCCAT CACGCCAGCA CTGACTGTAT GGCATGCCAC AATACCGACA ACACTTACCA TGGCACCGGC AGCCCTACCA AACGCCACGG CGATGTAATG AAGGCCTACA CTCTGGCAAG CGAGCTGAGC GTCAAAGTAC TCGATGTCAG TGCCAATGCA GGCAAAATGA CCTTTAAGGT GCAGGTGCTG GACAAAAATG GCGCACCGAT GGACCAGACG TTTATCAACC AAAGCAGCCG CATGGTCGTG GCCTGGGATG TAGATAAAGA CTATCCCGCC TACAATGAAG CCTCCTACAG CAATCGTCGC ATTCGCTTGA GCGAAGGCAG CTACGATGCC ACCGAGAAAA GCTACACGCT GACGCCAAGT GCGGCTCTGC CTGCAATGCC GGACGGAAAG AGCTTTGAGA TTTGGTCCAC ACTGGAGGCC TGTTTCAATA ACGGTGGTTA TGGGGTTGAA GATATACAAC TGACTGATTG CAGTGCTGAT GGGGTCAGAA CCGTTGCCAT TAAAGAAAGC CCCTATCGCT TTGTTTGGGG CAATAATGGT ATCGACAGCT CGCAGCCAGC GGCTATGCGC CGTGCCATTA TCGACACCGC CAAGTGCCAG GCGTGCCATG GTCAGGAAAT TCACCACTAT GACAACGGCG TCAATTGCCA GACATGCCAC ACCTCGGATA AAACACTGAG AAACAGTACA ACCTATCCCG GTGGTCGTAT GCCCAGCAGC TTTGCCTGGA AGGCACACGA GCGTGAAGGC CACTATCTCA AGTATGGCGG GCTGCAATCG GGAACCGTGC TCAAGACCGA TTGCGCCACC TGCCACACCG AAGCTGGCAA CAGCGTTACC GGCATCACCC TTGGTCGAGC ACCTGAACGT GTGTGGCGCT ATGGTGACAC TCAAAACAAT GGTGCCGAAA TCTGGGTCTC TTCCGATGCA GGAAGTTGCC TGAGCTGCCA CCAACAATAC TTGAGTGATG CCGCCAAATC ACACATCACG GCCAACGGCG GTATTCTGGA TGGAATGGAT GAGGCCGATG TCCGCAATCG TGCCAAAGAA ACCTGTTCTA CCTGCCATAC GCCAACGCAG CTAATGGAAG TTCACGGCAA CTGA
|
Protein sequence | MNFQRQVYRT TRLALAALIS LTLFACGSDG EDGKDGEDGV VGVNIDSTAT LKVNFTDARV EDGKVTADFI LTNANGVAVL GLTKAHDLRF GIAQLTQVTQ TIGTGDEARE ADLGYQWQAY INSLRQPGTV PEGVDGLNPS PQYQAGVEAA NGCDTCLVDH GDGSYSYSFQ VNIAQVTEPL AVVYNADATQ RITMELKLPQ VVANGHFDWQ PSSGNTEGIQ TRNVVTIKAC YTCHQPESLE LHGGRRLDLE NCVACHTATS GDPESGNSVE FTYLIHAIHR GAERHTFDAD GNQVDDPYKI VGFGGSVHDY GLVHFPRKPA SDCSVCHQEG TGAPADAALF KAEKSNTACV ACHSEKPSSH HASTDCMACH NTDNTYHGTG SPTKRHGDVM KAYTLASELS VKVLDVSANA GKMTFKVQVL DKNGAPMDQT FINQSSRMVV AWDVDKDYPA YNEASYSNRR IRLSEGSYDA TEKSYTLTPS AALPAMPDGK SFEIWSTLEA CFNNGGYGVE DIQLTDCSAD GVRTVAIKES PYRFVWGNNG IDSSQPAAMR RAIIDTAKCQ ACHGQEIHHY DNGVNCQTCH TSDKTLRNST TYPGGRMPSS FAWKAHEREG HYLKYGGLQS GTVLKTDCAT CHTEAGNSVT GITLGRAPER VWRYGDTQNN GAEIWVSSDA GSCLSCHQQY LSDAAKSHIT ANGGILDGMD EADVRNRAKE TCSTCHTPTQ LMEVHGN
|
| |