| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1038 |
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| Symbol | ispD |
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| ID | 4603290 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1256902 |
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| End bp | 1257618 |
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| Gene Length | 717 bp |
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| Protein Length | 238 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 639780377 |
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| Product | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
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| Protein accession | YP_926915 |
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| Protein GI | 119774175 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1211] 4-diphosphocytidyl-2-methyl-D-erithritol synthase |
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| TIGRFAM ID | [TIGR00453] 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.898769 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATTTCC AATCAAGCTC CAGTGGCAGC ATCGTCGCTA TTGTTCCTGC GGCCGGAATT
GGCAGCCGAA TGGGGGCCAC TATCCCGAAA CAATACCTGC CGTTATTGGA TAAACCTATC
CTCGCCCATA CCCTGCAAAG GCTGCTCTCC CATCCTGCTA TTGATAAGGT CATAGTCGCT
GTCTCGGCCG AAGATAGCTG GTTTGACAGT TTGGCTGAAG CGCGCGACCC CAAACTGACT
CGGGTACTGG GCGGAAAAGA GCGTGCCGAT TCGGTATTGG CAGCCCTTTC GGCCTTGCCG
GACAGTTGCG ATGCCTGGGC GCTGGTGCAT GATGCCGCAC GGCCTTGTTT GACCCATGGT
GATATAGATG CGCTGCTTGC AAGCAGGCTG ACGTATCCCC AGGGCGCGAT ACTTGCCATG
CCTGTGCGGG ATACCATGAA GCGGGCAGCG ACCGATGGCA GTATCGAAAC CACTGTTTGC
CGCGAAGCCC TGTGGCATGC GTTAACGCCG CAGCTTTTTC CGGCAGAGCG CTTGAAACAG
CATCTGGAGC AGGCGCTGGC CGCCGGTGTT TCTATTACCG ACGAAGCGTC GGCGATGGAG
TGGGCCGGAG TGTATCCGGG GCTGGTCAGT GGCCGCGCCG ACAATATCAA GGTCACCCAC
CCGGACGATT TACAGCTGGC GGGGCTTTTT CTTCAGGCCC AGCAGCAACA CACTTAA
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| Protein sequence | MNFQSSSSGS IVAIVPAAGI GSRMGATIPK QYLPLLDKPI LAHTLQRLLS HPAIDKVIVA
VSAEDSWFDS LAEARDPKLT RVLGGKERAD SVLAALSALP DSCDAWALVH DAARPCLTHG
DIDALLASRL TYPQGAILAM PVRDTMKRAA TDGSIETTVC REALWHALTP QLFPAERLKQ
HLEQALAAGV SITDEASAME WAGVYPGLVS GRADNIKVTH PDDLQLAGLF LQAQQQHT
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