| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0983 |
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| Symbol | |
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| ID | 4603235 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1188516 |
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| End bp | 1189226 |
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| Gene Length | 711 bp |
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| Protein Length | 236 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 639780322 |
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| Product | DNA-binding transcriptional regulator TorR |
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| Protein accession | YP_926860 |
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| Protein GI | 119774120 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.291581 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCTACA CAGTTTTGGT CGTCGATGAT GAGGCGGTTA TTCGCACCCG CCTGAAAGGC
TACTTCAGCA AGGAAGGCTA TCGGGTGTTG GAGGCCGCCA ATGGGGAAGA AATGTGGCAA
CAATTGGCGC TGGCCCATGT GGATTTGATT ATGCTGGATA TCAATCTGCC GGGAACCGAT
GGTCTTTCGC TGACCCGGGA GCTCAGAAGT CGCTCTGACG TGGGCATCAT TCTGGTGAGT
GGCCGGGATG AGACCGTCGA TAGAATCGTT GGCCTTGAGA TGGGGGCTGA CGACTATGTC
ACCAAGCCCT TTGAGCTTAG AGAGCTGTTG GTGCGGGTAA AAAACCTGCT GTGGCGTATC
TCCTTGGTGG AAAAGGCTAA ACAGCAGGCT GTAGCCGCCA TGGATGAGGG CGATGACAGA
ATCGAGTTCG ACGACTATGT GCTTGAACTT GGCAGTCGCA AGTTGTCCCG GGGCGAGGCG
GTTATCAAGC TCACCAAGGC GGAATTCGAG CTGCTGGTGG CTTTTGCGTT GCACCCACGG
CAGGTGCTGT CGCGGGAGCG TTTAATGCAG CAAACCAGCC ATCGCAGTGA AGATGCCAAC
GACCGTACCA TAGACGTGAT TATCCGCCGC CTGCGCGGTA AGCTCAATCC AGAGCTGTTT
GTGACAGTTC ATGGCGAAGG ATATCTCTTT GCTGCCAGCG TCAGGGATTA A
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| Protein sequence | MAYTVLVVDD EAVIRTRLKG YFSKEGYRVL EAANGEEMWQ QLALAHVDLI MLDINLPGTD
GLSLTRELRS RSDVGIILVS GRDETVDRIV GLEMGADDYV TKPFELRELL VRVKNLLWRI
SLVEKAKQQA VAAMDEGDDR IEFDDYVLEL GSRKLSRGEA VIKLTKAEFE LLVAFALHPR
QVLSRERLMQ QTSHRSEDAN DRTIDVIIRR LRGKLNPELF VTVHGEGYLF AASVRD
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