| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0968 |
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| Symbol | prfC |
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| ID | 4603220 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1171131 |
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| End bp | 1172717 |
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| Gene Length | 1587 bp |
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| Protein Length | 528 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639780307 |
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| Product | peptide chain release factor 3 |
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| Protein accession | YP_926845 |
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| Protein GI | 119774105 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG4108] Peptide chain release factor RF-3 |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00503] peptide chain release factor 3 |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.463155 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.000218803 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGTCAAATA CATTGCTTGC CGAAGTGGCT TCGCGCCGCA CCTTCGCCAT TATTTCTCAC
CCGGACGCCG GTAAAACCAC CATTACCGAA AAGGTATTGT TGCACGGCCG CGCCATTCAA
AGCGCCGGTA CTGTAAAGGG GCGGGGCAGC GGTCAGCATG CCAAGTCTGA CTGGATGGAA
ATGGAAAAAG AGCGGGGTAT TTCGGTTACC ACCTCTGTGA TGCAGTTTCC TTACAACAGC
TGCCTGGTGA ACCTGCTCGA TACCCCAGGT CACGAAGACT TCTCGGAAGA TACCTACCGT
ACCCTGACGG CGGTAGATTC CTGTTTGATG GTGATTGATG CCGCCAAGGG TGTGGAAGAC
CGTACCCGCA AGCTGATGGA AGTCACCCGT CTGCGTGATA CGCCCATCGT GACCTTTATG
AACAAGCTTG ACCGTGATAT CCGCGATCCC ATGGAGCTGC TCGACGAGGT GGAGACAGAG
CTTAACATCC TCTGCGCCCC CATCACCTGG CCTATTGGTT GCGGTAAATT GTTCAAGGGC
GTTTATCACC TGCACCGTGA TGAAACCATC CTGTATCAGA CTGGCCATGG CCATACCATT
CAGGAACTGC GCATTGTAAA AGGCCTGGAT AATCCGGATC TGGATGCTGC TGTTGGCAGT
GACTTTGCCG AGCAGTTGCG TGAAGAGCTG GAGCTGGTGC GCGGCGCCTC CAATGAGTTC
GACAAGGAAC TGTTTTTGAG TGGTGAGCTG ACACCGGTTT ATTTCGGTAC CGCCCTGGGT
AACTTTGGTG TAGACCATAT GCTTGATGGC TTGACCGAAT GGGCGCCTGC ACCCATGCCA
CGTGAGACCA GCGAGCGCAC CGTGGAAGCC GGGGAGGACA AGTTCTCGGG CTTCGTGTTT
AAAATTCAGG CCAACATGGA TCCCAAGCAC CGTGACCGTA TCGCCTTTAT GCGCATAGTG
TCGGGCAAGT ACACCCAGGG CATGAAGATG AAGCACGTGC GCATTGGCAA AACCGTGAAC
ATCTCAGATG CCGTGACTTT TATGGCCGGT GATCGTGAGC GCGCCGAAGA AGCCTTTGCG
GGCGATATTA TCGGTCTGCA CAACCACGGC ACCATCCAGA TTGGTGATAC CTTTACCCAG
GGTGAAGATC TCAAGTTCAC CGGTATTCCC AACTTTGCAC CTGAAATGTT CCGCCGTATT
CGTCTGAAAG ATCCGTTGAA GCAAAAGCAG CTGCTTAAGG GCCTGGTACA ACTTTCTGAA
GAAGGTGCCG TACAGGTGTT CCGCCCGCTG GACACCAACG ATCTTATCGT TGGGGCTGTG
GGGGTGCTGC AGTTTGAAGT GGTAGTTGCC CGCCTCAAGT CCGAATATAA CGTTGAAGCT
ATCTACGAGG CGGTCAACGT GGCGACAGCG CGTTGGGTCT ATTGTGAAGA TGGGCGTAAA
CTGGAAGAAT TCAAACGTAA GTGTTCCACC AATCTGGCAT TGGATGGTGG TGACAATCTC
ACTTACATTG CCCCCACTAT GGTTAATCTG AATCTGTCGA TGGAACGTTA TCCCGACATT
CAGTTTGCCA AGACCCGCGA GCATTAA
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| Protein sequence | MSNTLLAEVA SRRTFAIISH PDAGKTTITE KVLLHGRAIQ SAGTVKGRGS GQHAKSDWME
MEKERGISVT TSVMQFPYNS CLVNLLDTPG HEDFSEDTYR TLTAVDSCLM VIDAAKGVED
RTRKLMEVTR LRDTPIVTFM NKLDRDIRDP MELLDEVETE LNILCAPITW PIGCGKLFKG
VYHLHRDETI LYQTGHGHTI QELRIVKGLD NPDLDAAVGS DFAEQLREEL ELVRGASNEF
DKELFLSGEL TPVYFGTALG NFGVDHMLDG LTEWAPAPMP RETSERTVEA GEDKFSGFVF
KIQANMDPKH RDRIAFMRIV SGKYTQGMKM KHVRIGKTVN ISDAVTFMAG DRERAEEAFA
GDIIGLHNHG TIQIGDTFTQ GEDLKFTGIP NFAPEMFRRI RLKDPLKQKQ LLKGLVQLSE
EGAVQVFRPL DTNDLIVGAV GVLQFEVVVA RLKSEYNVEA IYEAVNVATA RWVYCEDGRK
LEEFKRKCST NLALDGGDNL TYIAPTMVNL NLSMERYPDI QFAKTREH
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