| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0966 |
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| Symbol | |
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| ID | 4603218 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1167839 |
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| End bp | 1169938 |
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| Gene Length | 2100 bp |
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| Protein Length | 699 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639780305 |
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| Product | polynucleotide phosphorylase/polyadenylase |
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| Protein accession | YP_926843 |
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| Protein GI | 119774103 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
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| TIGRFAM ID | [TIGR03591] polyribonucleotide nucleotidyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000874082 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.0188392 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAATCCTA TCGTAAAAAG TTTTGAGTAT GGTCAGCATA CAGTCACTCT GGAAACAGGC
GTAATCGCTC GTCAAGCCGA TGGTGCCGTA ATGGCAAGCA TGGGCGACAC AACTGTACTG
GTTACCGTTG TGGGCAAGAA GGAAGCAGAC CCAGGCCGTG ACTTCTTCCC ACTTACCGTA
AACTACCAGG AAAAAACTTA CGCAGCTGGT AAGATCCCCG GTGGCTTCTT TAAGCGTGAA
GGCCGTCCAT CTGAAGACGA AACTCTGATT GCCCGATTGA TCGATCGTCC AATCCGCCCC
CTGTTCCCTG ATGACTTTAC CAACGAAGTA CAGGTCATCA TCACAGTGGT CTCGGTAGAC
CCTCAGATTG AGCCGGACAT TGTTTCTATG ATCGGTACTT CTGCTGCCCT GGCGATTTCA
GGTATTCCAT TTAACGGTCC TCTGGGTGCT GCCCGCGTGG GTTATGTGAA TGGCGAATAC
GTGTTGAACC CAGGTGCCGC TGAACTGGCT GGCAGCGAAC TGGATCTGGT GGTTGCCGGT
ACCCAGAGCG CCGTACTGAT GGTGGAATCT GAAGCCAAAT CTCTGCCAGA AGAAGTCATG
CTGGGTGCCG TAGTGTACGG TCATGACCAG CAGCAGGTTG TTATCAATGC CATCAACGAG
TTTGCTGCCG AAGCCGGTAA GCCACGTTGG AACTGGACTG CACCTGTTAA AAATGAAGCC
CTGGTAGCAC AAATCAAAGA GCTGGCCGAA GAAGGCCTGA CTGCGGCTTA CCAGATCATG
GCCAAGCAAG AACGTTACGA AGCCGTTGGT GAAGTAAAGA AAGCCACTAT CGCCAAGCTG
CAGGAAGCCA ATCCTGACGT GAACGTACGT GAAGCTGCCG ATCTGCTGGG TAGCCTGGAG
AAGAACGTCG TTCGCGGCCG CATTATCGCT GGCATGCCAC GTATCGACGG CCGTGAGCCA
GACATGATCC GTGCCCTGTC TGTCATGGCA GGTGTACTGC CACGTACCCA CGGCTCTGCC
CTGTTCACCC GTGGTGAAAC TCAGGCGTTG GTAACCTGTA CTCTGGGTAC CGAGCGTGAT
GCCCAGAAGA TTGACTCCAT CATGGGCGAG CGCACCAATC GCTTCATGCT GCACTACAAC
TTCCCTCCAT ACTCTGTGGG TGAAACCGGT ATGGTTGGCT CGCCAAAGCG CCGCGAAATC
GGCCACGGTA AGCTGGCATG GCGCGGTATC AACGCGGTAA TGCCATCTGC CGAAGAGTTC
CCATACTCTG TACGTGTGGT ATCTGAAATC ACTGAGTCCA ACGGTTCTTC TTCCATGGCC
TCTGTGTGCG GTACCTCTCT GGCGCTGATG GATGCCGGTG TACCTATCAA GACTTCTGTG
GCCGGTATTG CCATGGGTCT GGTGAAGGAA GGTGACAACT TCGTGGTTCT GTCTGACATC
CTGGGTGACG AAGACCACCT GGGTGACATG GACTTCAAAG TAGCCGGTAC CCGTGATGGT
GTTACTGCAC TGCAGATGGA CATCAAAATC GAAGGTATCA CCAAAGAAAT CATGGAAATC
GCTCTGCAGC AGGCTTACGG CGCCCGCGTT CACATCCTGA ACGTGATGGA CCAGGCCATC
GGTAGTGCCC GTCCAGATAT CTCTGACTTC GCGCCACGTA TCACCACCAT CAAGATCAAC
CCAGAGAAGA TCCGTGATGT TATCGGTAAA GGCGGCGCCG TTATCCGTGC GCTGACTGAA
GAAACCGGTA CCACCATCGA GCTGGAAGAT GACGGTACTG TGAAGATTGC CTCTAACAAT
GGCGACGCTA CCCGCGAAGC TATCCGCCGC ATCGAGGAAA TCACCTCAGA AGTGGAAGTG
GGTCGTCTGT ACACAGGTAA GGTTATCCGT ATCGTTGACT TCGGTGCCTT CGTGAACATC
CTGCCCGGCA AAGATGGTCT GGTACACATC TCGCAAATCA GCGATGAGCG TGTAGCCAAC
GTATCTGACC ACCTGCAACT GAACCAGGAA GTGACCGTGA AGGTCATGGA AGTGGATCGT
CAGGGTCGTG TGCGTCTGTC TATCAAGGAA GCTCAGGTTA AAGAACCTGC TGCCGAATAA
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| Protein sequence | MNPIVKSFEY GQHTVTLETG VIARQADGAV MASMGDTTVL VTVVGKKEAD PGRDFFPLTV
NYQEKTYAAG KIPGGFFKRE GRPSEDETLI ARLIDRPIRP LFPDDFTNEV QVIITVVSVD
PQIEPDIVSM IGTSAALAIS GIPFNGPLGA ARVGYVNGEY VLNPGAAELA GSELDLVVAG
TQSAVLMVES EAKSLPEEVM LGAVVYGHDQ QQVVINAINE FAAEAGKPRW NWTAPVKNEA
LVAQIKELAE EGLTAAYQIM AKQERYEAVG EVKKATIAKL QEANPDVNVR EAADLLGSLE
KNVVRGRIIA GMPRIDGREP DMIRALSVMA GVLPRTHGSA LFTRGETQAL VTCTLGTERD
AQKIDSIMGE RTNRFMLHYN FPPYSVGETG MVGSPKRREI GHGKLAWRGI NAVMPSAEEF
PYSVRVVSEI TESNGSSSMA SVCGTSLALM DAGVPIKTSV AGIAMGLVKE GDNFVVLSDI
LGDEDHLGDM DFKVAGTRDG VTALQMDIKI EGITKEIMEI ALQQAYGARV HILNVMDQAI
GSARPDISDF APRITTIKIN PEKIRDVIGK GGAVIRALTE ETGTTIELED DGTVKIASNN
GDATREAIRR IEEITSEVEV GRLYTGKVIR IVDFGAFVNI LPGKDGLVHI SQISDERVAN
VSDHLQLNQE VTVKVMEVDR QGRVRLSIKE AQVKEPAAE
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