| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0953 |
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| Symbol | rrmJ |
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| ID | 4603205 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1152464 |
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| End bp | 1153093 |
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| Gene Length | 630 bp |
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| Protein Length | 209 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639780290 |
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| Product | 23S rRNA methyltransferase J |
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| Protein accession | YP_926830 |
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| Protein GI | 119774090 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0293] 23S rRNA methylase |
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| TIGRFAM ID | [TIGR00438] cell division protein FtsJ |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000000747151 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.2697 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACAGCTA AAAAACGTTC GGCCAGCTCC ACCCGTTGGA TGCAGGAGCA TTTCGATGAC
CACTATGTGA AATTGGCACA AAAACGGGGC TTACGCTCTC GTGCCGCCTT CAAGCTCGAA
GAATTACAGG AAAAGGATCA TCTGATAAAG CCCGGCATGA CGGTGGTGGA TTTGGGAGCA
GCCCCCGGTG GCTGGTCTCA GGTTGCGGTC AAACTCGTGG GTGATAGGGG TAAGGTGATA
GCCTGTGATA TCCTGCCTAT GGACCCCATT GTTGGCGTTG ATTTTCTGCA GGGTGATTTC
CGCGAAGATG CCGTGCTTAA CGCATTGCTC GAGCGGGTGG GTGACGAGAA GGTAGATGTT
GTGCTGTCTG ATATGGCACC CAACATGAGT GGTTCTGATG GGGTCGATCA GCCCCGAGCC
ATGTATCTGG TGGAATTGGC ACTGGATATG TGTCATCAGG TATTGGCGCC CAATGGCAGC
TTTGCCGTAA AAGTCTTTCA GGGGGAGGGC TTTGACGAGT ACATGAAAGC GGTCAGAGAG
GCGTTTAAGG TCGTTAAGAC ACGTAAACCG GACTCATCAC GGGCACGTTC CCGTGAGGTC
TATCTGGTGG CGACCGGGTA TAAGTTGTAG
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| Protein sequence | MTAKKRSASS TRWMQEHFDD HYVKLAQKRG LRSRAAFKLE ELQEKDHLIK PGMTVVDLGA
APGGWSQVAV KLVGDRGKVI ACDILPMDPI VGVDFLQGDF REDAVLNALL ERVGDEKVDV
VLSDMAPNMS GSDGVDQPRA MYLVELALDM CHQVLAPNGS FAVKVFQGEG FDEYMKAVRE
AFKVVKTRKP DSSRARSREV YLVATGYKL
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