Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_0927 |
Symbol | ispH |
ID | 4603179 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 1120174 |
End bp | 1121115 |
Gene Length | 942 bp |
Protein Length | 313 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 639780262 |
Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
Protein accession | YP_926804 |
Protein GI | 119774064 |
COG category | [I] Lipid transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0761] Penicillin tolerance protein |
TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTGGAC AGATGAACAT TCTGCTCGCC AATCCACGCG GCTTTTGTGC CGGCGTAGAT CGCGCTATCA GCATCGTTGA GCGTGCTCTT GAGCTGTTCT CGCCACCTAT ATATGTGCGT CACGAAGTGG TGCATAACCG TTATGTGGTG CAAAACCTCA AAGATCGTGG TGCTATCTTT GTTGAAGAGT TGGATCAGGT GCCGGACAAC AGCATAGTGA TCTTCTCTGC CCACGGGGTG TCGCAGGCGG TGCGGGCCGA GGCCAAAAAG CGTGGTCTGA AGGTATTCGA TGCCACCTGC CCATTGGTGA CCAAGGTGCA CCTGCAGGTA ACCCGGGCCA GCCGCAAAGG GGTTGAATGC ATCCTGATTG GCCATGAGGG TCATCCGGAA GTTGAAGGTA CTATGGGCCA GTACGATAAC CCTGAGGGTG GCGTTTATCT GATTGAGTCG GTGGAAGATG TCGAAGCGCT TCAGGTGAAA GACCCGGAAA ACCTGTGCTT CGTCACTCAA ACTACATTGT CGGTTGACGA TACGCTGGAC ATCATCGCGG CGCTGCAGGC GAAGTTTCCG TCCATTGAGG GGCCACGCAA GGACGATATT TGTTACGCCA CTCAAAATCG CCAGGATGCG GTGCGCAGTC TGGCGACTCA GGCCAAGCTC TTTATCGTGG TGGGTTCGAA AAACAGCTCC AACTCCAACC GTTTGCGTGA GCTTGCCGAA AAGTCGGGTG CACAGGCGTA CTTGGTCGAC AGTGCCGCCG ATGTAAAGGC TGAGTGGTTT GCCAATGTAG ATAAAGTGGC TGTCACAGCC GGAGCATCAG CACCGGAAGT ACTGGTAAAG CAGGTTATCG ATGCAATTAC CCATCTCGCG CCCAGTGTGG TAACCGAGGT AGAGGGTCGT AAGGAAGACG TAGTTTTCGC CGTTCCGGTT GAACTCAGGT GA
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Protein sequence | MTGQMNILLA NPRGFCAGVD RAISIVERAL ELFSPPIYVR HEVVHNRYVV QNLKDRGAIF VEELDQVPDN SIVIFSAHGV SQAVRAEAKK RGLKVFDATC PLVTKVHLQV TRASRKGVEC ILIGHEGHPE VEGTMGQYDN PEGGVYLIES VEDVEALQVK DPENLCFVTQ TTLSVDDTLD IIAALQAKFP SIEGPRKDDI CYATQNRQDA VRSLATQAKL FIVVGSKNSS NSNRLRELAE KSGAQAYLVD SAADVKAEWF ANVDKVAVTA GASAPEVLVK QVIDAITHLA PSVVTEVEGR KEDVVFAVPV ELR
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