Gene Sama_0907 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_0907 
Symbol 
ID4603159 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp1095784 
End bp1097070 
Gene Length1287 bp 
Protein Length428 aa 
Translation table11 
GC content55% 
IMG OID639780242 
Productthreonine synthase 
Protein accessionYP_926784 
Protein GI119774044 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0498] Threonine synthase 
TIGRFAM ID[TIGR00260] threonine synthase 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAATTAT ACAATCTTAA GCATCCCGAT GAGCGGGTAA GCTTTTCTCA GGCGGTAAAG 
CTGGGACTGG GTAAAGACCG CGGGCTGTTT TTCCCGACTC ATATTCCCAA GCTGGATGAT
GTTGAAACCC TGCTGACTTT ACCGTTTGCG CAGCGCAGTA AAAAAATACT GGGTGCCTGG
CTCGCTGATG AGTTGGGGCA AAATGTGGTG GATGCCCTGG TCGATAAAGC ATTTACCTTT
GAGGTGCCGC TGGTCAAGGT AGACGACACG CGTTATTGCC TGGAGCTTTT CCACGGCCCG
ACTCTGGCAT TCAAAGACTT TGGTGCCCGC TTCATGGCCC AGTGCCTGAA CGTGCTTGCC
GGTGATGAAC GGCTGACCAT TCTCACCGCC ACCTCAGGTG ATACTGGGGC TGCTGTGGCC
GACGCCTTCT ATGGGCTCGA TAAGGTGCAG GTCTGCGTGC TTTATCCAAA AGGCAAAATC
AGCCTGCTGC AGGAAAAGAT GTTTACTACC CTCGGCAACA ACATTCACAC GGTGGCGGTT
GAATCCGATT TTGACGCCTG TCAGGCGCTG GTGAAACAGG CCTTTGATGA TGCCGACGTC
CGTGAAGGAC TGCACCTTAA TTCGGCTAAC TCTATTAATA TCAGTCGGTT GCTGGCACAG
ATCTGCTATT ACTTCGAGGC CGTGGCTCAG TATCGCAAGA ACTTTGTCGA TGCACCGGTT
ATTGCCGTGC CCAGCGGCAA CTTCGGTAAT CTCACCGCTG GTTTCTTTGC CAAGGCCATG
GGCCTGCCGG TGAAGCGTTT TGTGGCCGCC ACCAACAGCA ACGACACTGT GCCGCGTTAT
CTCGCCAGCG CAAACTGGCA GGTCAATCCC ACAGTGGCCA CCATGTCCAA TGCCATGGAT
GTGGCAGACC CCAGCAACTG GCCTCGTGTG GAAGCCATCG CCAAGGTCAT GGGGTGGTCC
CTTGCTGAGA TTGATGGGGT AGCACTGGAC GAGCAACAAA CCCGTTGTGC TTTGCTGGCA
TTGCAGGAAG ATGGCTACTT GTCCGAACCC CACGCGGCCA TTGCTGCACA AGCGCTTAAG
GCCACACTAG GCAAGGACGA GCGGGGTATT TTTCTCGGTA CGGCTCATCC GGCGAAGTTC
AAAGATGTGG TCGACCATGA GCTGTCTCTG GACTTGCCTT TACCCCCAGA GCTTGCGGCG
GTTGCTGACA AGCCGGTTCT GTCGGCCAAT CTGGCGCCGG ATTTTGCCGC ACTCAAGACT
CATTTGTTTG AAACCTTGCG TCATTGA
 
Protein sequence
MELYNLKHPD ERVSFSQAVK LGLGKDRGLF FPTHIPKLDD VETLLTLPFA QRSKKILGAW 
LADELGQNVV DALVDKAFTF EVPLVKVDDT RYCLELFHGP TLAFKDFGAR FMAQCLNVLA
GDERLTILTA TSGDTGAAVA DAFYGLDKVQ VCVLYPKGKI SLLQEKMFTT LGNNIHTVAV
ESDFDACQAL VKQAFDDADV REGLHLNSAN SINISRLLAQ ICYYFEAVAQ YRKNFVDAPV
IAVPSGNFGN LTAGFFAKAM GLPVKRFVAA TNSNDTVPRY LASANWQVNP TVATMSNAMD
VADPSNWPRV EAIAKVMGWS LAEIDGVALD EQQTRCALLA LQEDGYLSEP HAAIAAQALK
ATLGKDERGI FLGTAHPAKF KDVVDHELSL DLPLPPELAA VADKPVLSAN LAPDFAALKT
HLFETLRH