| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0891 |
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| Symbol | trmD |
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| ID | 4603143 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1078882 |
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| End bp | 1079634 |
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| Gene Length | 753 bp |
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| Protein Length | 250 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639780226 |
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| Product | tRNA (guanine-N(1)-)-methyltransferase |
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| Protein accession | YP_926768 |
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| Protein GI | 119774028 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0336] tRNA-(guanine-N1)-methyltransferase |
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| TIGRFAM ID | [TIGR00088] tRNA (guanine-N1)-methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.00716093 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.32883 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTGGTTAG GGGTAATCAC CCTGTTTCCC GAAATGTTTC GTGCCATCAC TGATTTTGGG
GTCACGGGTC GGGCCATCAA AAATGGCCTG CTGGAGTTGC ACACGTGGAA TCCCCGTGAT
TTCACCCATG ACAGACACAG AACCGTGGAC GACAGGCCTT ATGGCGGCGG ACCGGGAATG
TTGATGATGG TGCAACCACT GAAAGATGCC ATCCAGGCTG CCAGAACGGC GGCGGGTGAC
GGAGCCAAGG TGATATATCT GTCTCCACAG GGGCGCAAGC TGACACAGCG GGGCGCAACT
GAGCTGGCAG AAACACAAAA GTTGATTTTG GTGTGCGGAC GTTACGAAGG TATCGATGAG
CGCATCATTC AGACTGAAGT GGACGAGGAA TGGTCAATCG GCGACTACGT GCTTTCGGGC
GGTGAGTTAC CGGCAATGAC CCTGATTGAT GCAGTGTCCC GTCTGGTACC CGGCGTGCTG
GGTAAACAGG CTTCGGCGGA GCAGGACTCT TTCTCCGACG GTTTGCTCGA TTGTCCTCAT
TACACCCGGC CCGAATCTTT GGATGGTCTT GAGGTGCCGG CAGTGCTGCT CGGTGGCAAC
CACGAAGACA TTAGACGCTG GCGTCTTAAA CAAAGTCTCG GAAGAACTTT TTTAAGAAGG
CCGGAATTAT TTGAAAATCT AGCTCTGACT GACGAACAAA CCCGCCTGCT GGCGCAGTTT
GTCGACGAAA TGGACAGTCC ACAGAAGTCG TAG
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| Protein sequence | MWLGVITLFP EMFRAITDFG VTGRAIKNGL LELHTWNPRD FTHDRHRTVD DRPYGGGPGM
LMMVQPLKDA IQAARTAAGD GAKVIYLSPQ GRKLTQRGAT ELAETQKLIL VCGRYEGIDE
RIIQTEVDEE WSIGDYVLSG GELPAMTLID AVSRLVPGVL GKQASAEQDS FSDGLLDCPH
YTRPESLDGL EVPAVLLGGN HEDIRRWRLK QSLGRTFLRR PELFENLALT DEQTRLLAQF
VDEMDSPQKS
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