| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0890 |
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| Symbol | rimM |
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| ID | 4603142 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1078336 |
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| End bp | 1078866 |
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| Gene Length | 531 bp |
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| Protein Length | 176 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 639780225 |
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| Product | 16S rRNA-processing protein RimM |
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| Protein accession | YP_926767 |
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| Protein GI | 119774027 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0806] RimM protein, required for 16S rRNA processing |
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| TIGRFAM ID | [TIGR02273] 16S rRNA processing protein RimM |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.000503781 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.334216 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGCAGTA ATCAACAACC TGTAGTAGTA GGCAAAATCG GCTCTACTTA CGGCGTAAAG
GGTTGGATGA AGATCACCGC CTATACCGAT TCCGTTGAAG GTATTTTCGA CTATTCTCCA
TGGTTCCTTA AAGAACATGG CGAATGGCGT GAGGTGAAGG TGTCCCAGTG GCGCTTCCAC
GGCAAGGCGG TCGTCGCCGA GCTTGAGGGA GTCAGCAACC GGGAGCAGGC TCAAATGCTC
ACCAACTGTG AGATTGGGAT CCTGGCCGAA CAAATGCCTG AGTTGCCCGA AGACGAGTTC
TATTGGCGCG ATCTCATTGG CTGTGAGGTA CTCAATACCA AGGGTTACAA CCTGGGTAAA
GTTGATCAGA TCCTGGAAAC AGGCTCCAAC GACGTACTCA TGGTCAAGGC CAACGCCAAA
GATGCTTTCG GCAAAACGGA ACGTATGATT CCGTATCTGC CTGACCAGTT TGTCCTTGAG
GTCAAACTGT CAGAAAAACA GATTATTGTG GATTGGGATC CTGACTTCTA A
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| Protein sequence | MSSNQQPVVV GKIGSTYGVK GWMKITAYTD SVEGIFDYSP WFLKEHGEWR EVKVSQWRFH
GKAVVAELEG VSNREQAQML TNCEIGILAE QMPELPEDEF YWRDLIGCEV LNTKGYNLGK
VDQILETGSN DVLMVKANAK DAFGKTERMI PYLPDQFVLE VKLSEKQIIV DWDPDF
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